PFRMAT SS
TARGET T0158
AUTHOR 4069-6308-1312 
METHOD This file is the result of combining several RDB files, specifically
METHOD T0158.t2k.dssp-ebghstl.rdb  (weight 1.53986)
METHOD T0158.t2k.stride-ebghtl.rdb  (weight 1.24869)
METHOD T0158.t2k.str.rdb  (weight 1.53983)
METHOD T0158.t2k.alpha.rdb  (weight 0.659012)
METHOD These files were combined by translating their predictions into EHL
METHOD predictions with tables generated by compare-real, and then combining
METHOD those predictions with weights proportional to their mutual information
METHOD with the EHL alphabet.  The comments from the individual files follow.
METHOD
METHOD Comments from T0158.t2k.dssp-ebghstl.rdb
METHOD ============================================
METHOD TARGET T0158
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0158.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 234
METHOD
METHOD ============================================
METHOD Comments from T0158.t2k.stride-ebghtl.rdb
METHOD ============================================
METHOD TARGET T0158
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0158.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 234
METHOD
METHOD ============================================
METHOD Comments from T0158.t2k.str.rdb
METHOD ============================================
METHOD TARGET T0158
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   13 (1 str )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0158.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 234
METHOD
METHOD ============================================
METHOD Comments from T0158.t2k.alpha.rdb
METHOD ============================================
METHOD TARGET T0158
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0158.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 234
METHOD
METHOD ============================================
MODEL 1
M C 0.88
K C 0.53
P E 0.59
E E 0.65
N E 0.60
K E 0.57
L E 0.47
P C 0.62
V C 0.79
L C 0.82
D C 0.81
L C 0.70
I C 0.73
S C 0.75
A H 0.54
E H 0.69
M H 0.77
K H 0.78
T H 0.76
V H 0.74
V H 0.68
N H 0.53
T C 0.60
L C 0.74
Q C 0.75
P C 0.74
D C 0.74
L C 0.76
P C 0.78
P C 0.75
W C 0.73
P C 0.72
A C 0.72
T C 0.71
G C 0.75
T C 0.78
I H 0.55
A H 0.58
E H 0.57
Q H 0.51
R H 0.54
Q H 0.63
Y H 0.65
Y H 0.64
T H 0.64
L H 0.60
E H 0.52
R C 0.50
R C 0.57
F C 0.66
W C 0.71
N C 0.77
A C 0.79
G C 0.80
A C 0.79
P C 0.74
E C 0.71
M C 0.64
A C 0.49
T E 0.57
R E 0.63
A E 0.66
Y E 0.67
M E 0.67
V E 0.63
P E 0.50
T C 0.67
K C 0.79
Y C 0.78
G C 0.83
Q C 0.78
V C 0.50
E E 0.74
T E 0.88
R E 0.90
L E 0.90
F E 0.87
C E 0.74
P C 0.63
Q C 0.82
P C 0.86
D C 0.87
S C 0.89
P C 0.88
A C 0.72
T E 0.89
L E 0.93
F E 0.93
Y E 0.93
L E 0.82
H C 0.60
G C 0.80
G C 0.71
G C 0.53
F H 0.46
I H 0.39
L C 0.51
G C 0.79
N C 0.84
L H 0.57
D H 0.57
T H 0.60
H H 0.56
D H 0.71
R H 0.90
I H 0.94
M H 0.95
R H 0.96
L H 0.96
L H 0.96
A H 0.96
S H 0.94
Y H 0.90
S C 0.53
Q C 0.94
C C 0.87
T E 0.70
V E 0.92
I E 0.92
G E 0.91
I E 0.73
D C 0.57
Y C 0.75
T C 0.73
L C 0.77
S C 0.87
P C 0.85
E C 0.83
A C 0.83
R C 0.83
F C 0.84
P C 0.63
Q H 0.57
A H 0.72
I H 0.93
E H 0.95
E H 0.95
I H 0.96
V H 0.96
A H 0.96
A H 0.96
C H 0.96
C H 0.96
Y H 0.96
F H 0.95
H H 0.93
Q H 0.88
Q H 0.83
A H 0.83
E H 0.82
D H 0.76
Y C 0.55
Q C 0.88
I C 0.85
N C 0.84
M C 0.56
S C 0.64
R C 0.51
I E 0.85
G E 0.91
F E 0.92
A E 0.80
G C 0.60
D C 0.72
S C 0.63
A H 0.73
G H 0.86
A H 0.94
M H 0.96
L H 0.96
A H 0.96
L H 0.96
A H 0.96
S H 0.96
A H 0.94
L H 0.91
W H 0.86
L H 0.79
R H 0.73
D H 0.60
K C 0.60
Q C 0.81
I C 0.81
D C 0.81
C C 0.82
G C 0.83
K C 0.75
V C 0.60
A E 0.55
G E 0.82
V E 0.90
L E 0.91
L E 0.88
W E 0.75
Y C 0.54
G C 0.65
L C 0.64
Y C 0.64
G C 0.73
L C 0.63
R C 0.62
D C 0.65
S C 0.74
V C 0.78
T C 0.57
R C 0.47
R H 0.66
L H 0.65
L H 0.59
G H 0.48
G C 0.55
V C 0.66
W C 0.76
D C 0.69
G C 0.66
L C 0.74
T C 0.82
Q H 0.90
Q H 0.93
D H 0.94
L H 0.95
Q H 0.95
M H 0.94
Y H 0.94
E H 0.93
E H 0.91
A H 0.85
Y H 0.67
L C 0.65
S C 0.81
N C 0.81
D C 0.80
A C 0.78
D C 0.78
R C 0.68
E C 0.71
S C 0.77
P C 0.68
Y C 0.66
Y C 0.63
C C 0.76
L C 0.58
F C 0.53
N C 0.61
N C 0.62
D C 0.52
L C 0.56
T C 0.57
R C 0.75
E C 0.84
V C 0.87
P C 0.90
P C 0.66
C E 0.82
F E 0.91
I E 0.92
A E 0.91
G E 0.80
A C 0.59
E C 0.78
F C 0.83
D C 0.82
P C 0.68
L C 0.64
L H 0.53
D H 0.74
D H 0.82
S H 0.91
R H 0.95
L H 0.95
L H 0.96
Y H 0.96
Q H 0.96
T H 0.96
L H 0.96
A H 0.94
A H 0.86
H C 0.62
Q C 0.94
Q C 0.91
P C 0.58
C E 0.75
E E 0.88
F E 0.91
K E 0.89
L E 0.81
Y C 0.58
P C 0.88
G C 0.92
T C 0.71
L C 0.50
H E 0.54
A E 0.49
F E 0.41
L H 0.37
H C 0.41
Y C 0.64
S C 0.64
R C 0.62
M C 0.61
M C 0.67
K H 0.81
T H 0.89
A H 0.93
D H 0.95
E H 0.95
A H 0.95
L H 0.96
R H 0.96
D H 0.96
G H 0.96
A H 0.96
Q H 0.95
F H 0.95
F H 0.93
T H 0.89
A H 0.69
Q C 0.53
L C 0.91
END