PFRMAT SS
TARGET T0158
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0158.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 234
METHOD
MODEL 1
M E 0.261
K E 0.325
P E 0.397
E E 0.436
N E 0.339
K B 0.337
L E 0.266
P B 0.286
V B 0.188
L B 0.303
D B 0.313
L H 0.269
I H 0.259
S B 0.231
A H 0.287
E H 0.532
M H 0.554
K H 0.618
T H 0.616
V H 0.536
V H 0.475
N H 0.274
T B 0.223
L B 0.317
Q B 0.299
P B 0.273
D B 0.252
L B 0.231
P B 0.280
P B 0.276
W B 0.197
P B 0.190
A E 0.190
T E 0.174
G B 0.250
T B 0.293
I H 0.322
A H 0.448
E H 0.322
Q H 0.318
R H 0.369
Q H 0.489
Y H 0.434
Y H 0.443
T H 0.546
L H 0.425
E H 0.292
R H 0.227
R B 0.211
F B 0.253
W B 0.208
N S 0.184
A B 0.225
G B 0.251
A B 0.308
P B 0.218
E S 0.161
M E 0.198
A E 0.345
T E 0.323
R E 0.327
A E 0.341
Y E 0.379
M E 0.346
V B 0.389
P E 0.247
T B 0.242
K H 0.176
Y D 0.153
G S 0.260
Q S 0.233
V B 0.462
E E 0.497
T E 0.543
R E 0.608
L E 0.495
F E 0.464
C E 0.355
P B 0.391
Q H 0.257
P S 0.201
D B 0.191
S S 0.293
P B 0.468
A E 0.535
T E 0.752
L E 0.672
F E 0.760
Y E 0.522
L E 0.357
H S 0.195
G D 0.160
G S 0.225
G B 0.158
F E 0.273
I E 0.246
L H 0.173
G C 0.187
N B 0.197
L H 0.337
D H 0.375
T H 0.389
H H 0.298
D H 0.621
R H 0.826
I H 0.905
M H 0.894
R H 0.940
L H 0.940
L H 0.916
A H 0.933
S H 0.852
Y H 0.765
S B 0.837
Q T 0.572
C B 0.631
T E 0.799
V E 0.510
I E 0.666
G E 0.605
I E 0.340
D E 0.209
Y B 0.252
T H 0.182
L C 0.184
S C 0.254
P B 0.199
E S 0.219
A E 0.312
R H 0.166
F B 0.285
P H 0.339
Q H 0.476
A H 0.562
I H 0.857
E H 0.925
E H 0.916
I H 0.915
V H 0.960
A H 0.973
A H 0.965
C H 0.958
C H 0.967
Y H 0.984
F H 0.936
H H 0.925
Q H 0.887
Q H 0.747
A H 0.683
E H 0.650
D H 0.675
Y B 0.701
Q T 0.327
I B 0.351
N E 0.550
M I 0.469
S G 0.358
R E 0.264
I E 0.614
G E 0.660
F E 0.427
A E 0.214
G B 0.196
D S 0.201
S H 0.177
A H 0.460
G H 0.537
A H 0.782
M H 0.913
L H 0.934
A H 0.951
L H 0.960
A H 0.963
S H 0.940
A H 0.920
L H 0.871
W H 0.797
L H 0.747
R H 0.615
D H 0.539
K B 0.563
Q S 0.415
I B 0.210
D B 0.273
C B 0.228
G B 0.244
K B 0.385
V A 0.363
A F 0.226
G E 0.477
V E 0.573
L E 0.579
L E 0.480
W A 0.314
Y B 0.291
G B 0.218
L E 0.228
Y S 0.134
G E 0.261
L I 0.237
R H 0.213
D H 0.184
S S 0.189
V B 0.294
T H 0.321
R H 0.366
R H 0.462
L H 0.483
L H 0.405
G H 0.263
G H 0.326
V S 0.370
W B 0.226
D H 0.233
G S 0.205
L B 0.373
T B 0.572
Q H 0.677
Q H 0.870
D H 0.884
L H 0.936
Q H 0.941
M H 0.944
Y H 0.914
E H 0.817
E H 0.789
A H 0.628
Y S 0.345
L B 0.202
S H 0.204
N H 0.219
D S 0.389
A B 0.231
D E 0.240
R H 0.308
E S 0.333
S E 0.317
P H 0.419
Y H 0.394
Y S 0.227
C E 0.390
L H 0.381
F H 0.385
N S 0.240
N B 0.187
D H 0.331
L S 0.243
T S 0.208
R H 0.211
E S 0.580
V B 0.372
P B 0.402
P E 0.410
C E 0.604
F E 0.675
I E 0.634
A E 0.414
G E 0.256
A B 0.337
E H 0.252
F S 0.307
D E 0.412
P H 0.440
L S 0.298
L H 0.439
D H 0.645
D H 0.772
S H 0.878
R H 0.935
L H 0.965
L H 0.922
Y H 0.938
Q H 0.927
T H 0.937
L H 0.935
A H 0.821
A H 0.818
H B 0.797
Q T 0.573
Q B 0.663
P E 0.428
C E 0.472
E E 0.661
F E 0.478
K E 0.601
L E 0.385
Y C 0.377
P G 0.361
G S 0.549
T B 0.309
L E 0.155
H E 0.180
A H 0.276
F H 0.337
L H 0.430
H H 0.332
Y S 0.213
S H 0.233
R H 0.326
M S 0.328
M B 0.396
K H 0.742
T H 0.823
A H 0.901
D H 0.943
E H 0.947
A H 0.931
L H 0.948
R H 0.956
D H 0.964
G H 0.949
A H 0.956
Q H 0.963
F H 0.952
F H 0.865
T H 0.833
A H 0.714
Q H 0.506
L H 0.231
END