PFRMAT SS TARGET T0156 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0156.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 47 METHOD MODEL 1 M C 0.467 A C 0.406 I T 0.342 S T 0.361 F C 0.418 R C 0.511 P C 0.785 T H 0.730 A H 0.908 D H 0.944 L H 0.964 V H 0.942 D H 0.935 D H 0.924 I H 0.849 G H 0.529 P H 0.507 D H 0.442 V H 0.360 R C 0.399 S C 0.308 C C 0.356 D C 0.388 L C 0.358 Q C 0.369 F C 0.406 R C 0.439 Q C 0.434 F T 0.465 G T 0.596 G T 0.614 R T 0.545 S E 0.356 Q E 0.731 F E 0.837 A E 0.814 G E 0.828 P E 0.879 I E 0.954 S E 0.981 T E 0.987 V E 0.977 R E 0.943 C E 0.799 F T 0.514 Q T 0.891 D T 0.892 N T 0.663 A H 0.681 L H 0.768 L H 0.862 K H 0.867 S H 0.828 V H 0.913 L H 0.893 S H 0.883 Q H 0.718 P C 0.504 S T 0.832 A T 0.920 G T 0.929 G E 0.570 V E 0.972 L E 0.992 V E 0.987 I E 0.951 D T 0.485 G T 0.850 A T 0.850 G T 0.757 S C 0.656 L T 0.376 H T 0.395 T H 0.301 A H 0.408 L H 0.503 V H 0.772 G H 0.919 D H 0.942 V H 0.984 I H 0.990 A H 0.989 E H 0.989 L H 0.989 A H 0.984 R H 0.964 S H 0.951 T H 0.836 G C 0.948 W C 0.881 T E 0.535 G E 0.976 L E 0.993 I E 0.987 V E 0.917 H C 0.381 G T 0.526 A T 0.443 V T 0.345 R E 0.282 D C 0.399 A H 0.893 A H 0.930 A H 0.942 L H 0.958 R H 0.960 G H 0.866 I H 0.588 D C 0.892 I C 0.817 G C 0.535 I E 0.790 K E 0.851 A E 0.767 L E 0.484 G C 0.409 T C 0.387 N C 0.355 P T 0.405 R T 0.501 K T 0.500 S T 0.422 T T 0.347 K T 0.329 T C 0.380 G E 0.358 A E 0.418 G E 0.410 E E 0.539 R E 0.546 D E 0.510 V E 0.677 E E 0.855 I E 0.931 T E 0.913 L E 0.674 G T 0.769 G T 0.760 V E 0.533 T E 0.696 F E 0.707 V T 0.506 P T 0.724 G T 0.786 D E 0.714 I E 0.933 A E 0.958 Y E 0.964 S E 0.921 D E 0.718 D T 0.609 D T 0.776 G E 0.458 I E 0.866 I E 0.929 V E 0.832 V C 0.901 END