PFRMAT SS
TARGET T0156
AUTHOR 4069-6308-1312 
METHOD This file is the result of combining several RDB files, specifically
METHOD T0156.t2k.dssp-ebghstl.rdb  (weight 1.53986)
METHOD T0156.t2k.stride-ebghtl.rdb  (weight 1.24869)
METHOD T0156.t2k.str.rdb  (weight 1.53983)
METHOD T0156.t2k.alpha.rdb  (weight 0.659012)
METHOD These files were combined by translating their predictions into EHL
METHOD predictions with tables generated by compare-real, and then combining
METHOD those predictions with weights proportional to their mutual information
METHOD with the EHL alphabet.  The comments from the individual files follow.
METHOD
METHOD Comments from T0156.t2k.dssp-ebghstl.rdb
METHOD ============================================
METHOD TARGET T0156
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0156.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 47
METHOD
METHOD ============================================
METHOD Comments from T0156.t2k.stride-ebghtl.rdb
METHOD ============================================
METHOD TARGET T0156
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0156.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 47
METHOD
METHOD ============================================
METHOD Comments from T0156.t2k.str.rdb
METHOD ============================================
METHOD TARGET T0156
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   13 (1 str )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0156.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 47
METHOD
METHOD ============================================
METHOD Comments from T0156.t2k.alpha.rdb
METHOD ============================================
METHOD TARGET T0156
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0156.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 47
METHOD
METHOD ============================================
MODEL 1
M C 0.82
A C 0.66
I C 0.59
S C 0.58
F C 0.65
R C 0.77
P C 0.81
T H 0.51
A H 0.77
D H 0.82
L H 0.87
V H 0.84
D H 0.85
D H 0.80
I H 0.70
G H 0.59
P H 0.57
D H 0.53
V C 0.52
R C 0.57
S C 0.48
C C 0.51
D C 0.55
L C 0.53
Q C 0.52
F C 0.55
R C 0.64
Q C 0.66
F C 0.72
G C 0.78
G C 0.81
R C 0.80
S C 0.61
Q E 0.56
F E 0.70
A E 0.68
G E 0.60
P E 0.69
I E 0.83
S E 0.90
T E 0.91
V E 0.90
R E 0.87
C E 0.69
F C 0.75
Q C 0.88
D C 0.85
N C 0.73
A H 0.58
L H 0.71
L H 0.85
K H 0.88
S H 0.88
V H 0.90
L H 0.89
S H 0.85
Q H 0.63
P C 0.77
S C 0.89
A C 0.88
G C 0.91
G C 0.59
V E 0.88
L E 0.92
V E 0.92
I E 0.87
D C 0.53
G C 0.85
A C 0.92
G C 0.90
S C 0.79
L C 0.43
H H 0.49
T H 0.64
A H 0.67
L H 0.65
V H 0.81
G H 0.89
D H 0.94
V H 0.95
I H 0.96
A H 0.96
E H 0.96
L H 0.96
A H 0.96
R H 0.95
S H 0.90
T C 0.62
G C 0.94
W C 0.88
T C 0.57
G E 0.88
L E 0.93
I E 0.92
V E 0.89
H C 0.50
G C 0.75
A C 0.57
V C 0.47
R C 0.58
D C 0.69
A H 0.89
A H 0.92
A H 0.93
L H 0.92
R H 0.87
G H 0.65
I C 0.64
D C 0.90
I C 0.87
G C 0.66
I E 0.59
K E 0.70
A E 0.66
L E 0.49
G C 0.58
T C 0.58
N C 0.69
P C 0.71
R C 0.70
K C 0.70
S C 0.66
T C 0.63
K C 0.60
T C 0.69
G C 0.71
A C 0.68
G C 0.62
E C 0.55
R C 0.53
D C 0.59
V C 0.50
E E 0.66
I E 0.86
T E 0.86
L E 0.70
G C 0.80
G C 0.80
V E 0.55
T E 0.77
F E 0.69
V C 0.71
P C 0.85
G C 0.87
D C 0.51
I E 0.89
A E 0.92
Y E 0.91
S E 0.88
D C 0.49
D C 0.79
D C 0.89
G C 0.69
I E 0.71
I E 0.89
V E 0.84
V C 0.79
END