PFRMAT SS TARGET T0156 AUTHOR 4069-6308-1312 METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 7 (1 EBGHSTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0156.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 47 METHOD MODEL 1 M C 0.903 A C 0.569 I C 0.373 S T 0.250 F C 0.254 R C 0.483 P C 0.646 T H 0.316 A H 0.544 D H 0.648 L H 0.765 V H 0.763 D H 0.783 D H 0.754 I H 0.692 G H 0.598 P H 0.658 D H 0.631 V H 0.456 R H 0.320 S H 0.293 C C 0.300 D C 0.314 L C 0.279 Q C 0.284 F C 0.346 R C 0.444 Q C 0.349 F C 0.356 G C 0.308 G T 0.494 R T 0.389 S C 0.414 Q E 0.434 F E 0.594 A E 0.682 G E 0.631 P E 0.761 I E 0.903 S E 0.962 T E 0.970 V E 0.965 R E 0.930 C E 0.725 F C 0.345 Q S 0.413 D T 0.421 N T 0.377 A H 0.480 L H 0.674 L H 0.840 K H 0.878 S H 0.901 V H 0.908 L H 0.905 S H 0.832 Q H 0.576 P C 0.469 S C 0.725 A T 0.685 G T 0.629 G C 0.474 V E 0.905 L E 0.971 V E 0.971 I E 0.959 D E 0.682 G C 0.311 A S 0.528 G S 0.648 S C 0.463 L H 0.476 H H 0.572 T H 0.744 A H 0.812 L H 0.819 V H 0.872 G H 0.931 D H 0.978 V H 0.990 I H 0.994 A H 0.993 E H 0.994 L H 0.994 A H 0.992 R H 0.984 S H 0.923 T T 0.774 G T 0.899 W C 0.861 T C 0.551 G E 0.934 L E 0.993 I E 0.995 V E 0.978 H E 0.652 G S 0.319 A E 0.266 V E 0.277 R C 0.309 D C 0.572 A H 0.939 A H 0.942 A H 0.952 L H 0.948 R H 0.871 G H 0.579 I T 0.678 D T 0.676 I C 0.786 G C 0.634 I E 0.569 K E 0.738 A E 0.678 L E 0.581 G E 0.426 T E 0.377 N C 0.514 P C 0.490 R T 0.353 K C 0.251 S C 0.390 T C 0.349 K C 0.294 T C 0.284 G C 0.360 A C 0.376 G C 0.274 E C 0.406 R E 0.423 D C 0.472 V E 0.515 E E 0.710 I E 0.883 T E 0.883 L E 0.745 G T 0.723 G T 0.515 V E 0.669 T E 0.838 F E 0.707 V C 0.759 P T 0.919 G T 0.938 D C 0.452 I E 0.919 A E 0.982 Y E 0.983 S E 0.964 D E 0.523 D T 0.895 D T 0.916 G C 0.383 I E 0.674 I E 0.904 V E 0.896 V C 0.813 END