PFRMAT SS TARGET T0156 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 11 (1 ABCDEFGHIST ) METHOD The input amino acid frequencies were determined from METHOD alignment T0156.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 47 METHOD MODEL 1 M H 0.343 A H 0.405 I H 0.292 S H 0.369 F S 0.270 R B 0.374 P H 0.186 T H 0.312 A H 0.740 D H 0.845 L H 0.768 V H 0.737 D H 0.749 D H 0.629 I H 0.356 G H 0.421 P H 0.419 D H 0.313 V B 0.210 R H 0.165 S H 0.192 C E 0.167 D B 0.193 L H 0.224 Q H 0.234 F B 0.211 R B 0.333 Q E 0.206 F B 0.166 G D 0.234 G H 0.201 R S 0.447 S B 0.263 Q E 0.414 F E 0.362 A E 0.190 G C 0.327 P E 0.300 I E 0.411 S E 0.593 T E 0.534 V E 0.519 R E 0.443 C E 0.330 F B 0.168 Q C 0.167 D B 0.185 N H 0.201 A H 0.465 L H 0.754 L H 0.855 K H 0.881 S H 0.880 V H 0.797 L H 0.520 S H 0.552 Q S 0.431 P E 0.222 S C 0.407 A G 0.313 G S 0.708 G E 0.612 V E 0.840 L E 0.818 V E 0.622 I E 0.465 D C 0.331 G H 0.350 A B 0.327 G S 0.396 S B 0.199 L A 0.203 H H 0.464 T H 0.286 A H 0.292 L H 0.341 V H 0.429 G H 0.667 D H 0.862 V H 0.940 I H 0.941 A H 0.947 E H 0.962 L H 0.971 A H 0.952 R H 0.852 S H 0.827 T B 0.559 G T 0.450 W E 0.300 T G 0.201 G E 0.380 L E 0.755 I E 0.633 V E 0.384 H S 0.204 G S 0.323 A B 0.195 V H 0.188 R H 0.278 D A 0.216 A H 0.526 A H 0.837 A H 0.741 L H 0.671 R H 0.616 G H 0.349 I B 0.563 D S 0.377 I B 0.439 G E 0.405 I E 0.217 K E 0.308 A E 0.345 L G 0.156 G E 0.222 T E 0.238 N B 0.411 P E 0.206 R H 0.189 K B 0.152 S E 0.203 T B 0.426 K E 0.208 T B 0.164 G C 0.170 A E 0.145 G B 0.183 E E 0.269 R E 0.440 D A 0.241 V B 0.452 E E 0.542 I E 0.580 T A 0.436 L D 0.285 G D 0.540 G S 0.558 V B 0.537 T E 0.471 F E 0.386 V C 0.413 P G 0.518 G S 0.582 D E 0.456 I E 0.610 A E 0.587 Y E 0.467 S B 0.466 D C 0.841 D H 0.682 D B 0.762 G T 0.621 I E 0.478 I E 0.712 V E 0.557 V E 0.409 END