# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ja9A 274 8.05e-01 c.2.1.2 62817 1jhdA 396 1.41e+00 b.58.1.2 66712 c.26.1.5 66713 1qgvA 142 2.02e+00 1qgvA c.47.1.8 33056 1ldg 316 3.12e+00 1ceqA c.2.1.5 30165 d.162.1.1 42132 2viuA 328 3.33e+00 1hgeA b.19.1.2 23797 1hgeA 328 3.33e+00 1hgeA b.19.1.2 23816 1cr6B 554 3.53e+00 1cr6B c.108.1.2 43338 c.69.1.11 34688 1lqvA 193 3.99e+00 1thfD 253 4.17e+00 1thfD c.1.2.1 28535 3hmgA 328 4.28e+00 1hgeA b.19.1.2 23825 1jsbA 73 4.31e+00 d.15.3.2 67223 1gpjA 404 4.49e+00 a.151.1.1 65451 c.2.1.10 65452 d.58.39.1 65453 1b1cA 181 4.61e+00 1amoA c.23.5.2 31212 1cqzA 554 5.12e+00 1cr6B c.108.1.2 43339 c.69.1.11 34689 1ceqA 316 7.50e+00 1ceqA c.2.1.5 30163 d.162.1.1 42130 1i88A 389 7.68e+00 c.95.1.2 66070 c.95.1.2 66071 1dqpA 230 8.11e+00 1dqnA c.61.1.1 34069 1eg7A 557 8.42e+00 1eg7A c.37.1.10 32241 1a4mA 349 8.58e+00 1a4mA c.1.9.1 29014 1ja1A 622 9.17e+00 1amoA b.43.4.1 62803 c.23.5.2 62804 c.25.1.4 62805 1add 349 9.24e+00 1a4mA c.1.9.1 29020 1f74A 293 9.52e+00 1nal3 c.1.10.1 29079 1aiu 105 9.61e+00 1erv c.47.1.1 32746 1dqnA 230 9.92e+00 1dqnA c.61.1.1 34067 1f6bA 198 1.02e+01 c.37.1.8 64986 1i1dA 161 1.06e+01 1i21A d.108.1.1 61526 1i12A 160 1.06e+01 1i21A d.108.1.1 61515 1dkrA 317 1.07e+01 1dkuA c.61.1.2 34114 c.61.1.2 34115 1dik 874 1.09e+01 1dik c.1.12.2 29304 c.8.1.1 30702 d.142.1.5 41572 1pjbA 361 1.16e+01 1sayA c.2.1.4 30103 c.23.12.2 31363 1bi0 226 1.16e+01 1bi0 a.4.5.24 16202 a.76.1.1 18408 b.34.1.2 24453 1sayA 361 1.16e+01 1sayA c.2.1.4 30102 c.23.12.2 31362 1ad3A 452 1.18e+01 1ad3A c.82.1.1 35335 1pjcA 361 1.21e+01 1sayA c.2.1.4 30101 c.23.12.2 31361 1ybvA 283 1.22e+01 1ybvA c.2.1.2 29948 1byrA 155 1.23e+01 1byrA d.136.1.1 41450 1jdqA 98 1.24e+01 d.68.3.2 66559 1i21A 159 1.26e+01 1i21A d.108.1.1 61549 1qoiA 177 1.27e+01 2cpl b.62.1.1 27490 1in4A 334 1.29e+01 1hqcA a.4.5.11 62597 c.37.1.13 62598 1bvp1 349 1.31e+01 1bvp1 2hrvA 142 1.38e+01 2hrvA b.47.1.4 26429 2dtr 226 1.39e+01 1bi0 a.4.5.24 16193 a.76.1.1 18399 b.34.1.2 24450 1kblA 873 1.43e+01 c.1.12.2 68384 c.8.1.1 68385 d.142.1.5 68386 1hd7A 318 1.48e+01 1bix d.151.1.1 41780 1jkmA 358 1.55e+01 1jkmA c.69.1.2 34633 1hg3A 225 1.61e+01 1hg3A c.1.1.1 61025 1g0oA 283 1.61e+01 1ybvA c.2.1.2 60181 1gn0A 108 1.64e+01 c.46.1.3 65358 1jp4A 308 1.65e+01 1jp4A e.7.1.1 63223 2at2A 300 1.72e+01 3csuA c.78.1.1 35196 c.78.1.1 35197 1erw 105 1.76e+01 1erv c.47.1.1 32745 1kewA 361 1.84e+01 c.2.1.2 68544 1onrA 316 1.84e+01 1onrA c.1.10.1 29169 1fvuA 133 1.91e+01 1ixxB d.169.1.1 42345 1d0yA 761 1.95e+01 1lvk b.34.3.1 24581 c.37.1.9 32178 1e6pA 499 1.95e+01 1e15A b.72.2.1 59314 c.1.8.5 59315 d.26.3.1 59316 1psdA 409 1.96e+01 1psdA c.2.1.4 30097 c.23.12.1 31357 d.58.18.1 39354 1ddnA 226 2.00e+01 1bi0 a.4.5.24 16207 a.76.1.1 18413 1bob 320 2.06e+01 1bob d.108.1.1 40816 1kte 105 2.07e+01 1kte c.47.1.1 32771 1kk1A 410 2.10e+01 1dhpA 292 2.14e+01 1dhpA c.1.10.1 29097 1jkmB 361 2.15e+01 1jkmA c.69.1.2 34634 1alq 266 2.37e+01 1btl e.3.1.1 42707 1bib 321 2.39e+01 1bia a.4.5.1 16084 b.34.1.1 24448 d.104.1.2 40788 1jg1A 235 2.40e+01 c.66.1.7 66661 1ft9A 222 2.40e+01 1ft9A a.4.5.4 16107 b.82.3.1 28131 1ek1A 554 2.43e+01 1cr6B c.108.1.2 43335 c.69.1.11 34685 1dboA 506 2.46e+01 1dbgA b.80.1.4 28034 1dkuA 317 2.48e+01 1dkuA c.61.1.2 34118 c.61.1.2 34119 1ddbA 195 2.50e+01 1ddbA f.1.4.1 43399 1jpdX 324 2.59e+01 c.1.11.2 67014 d.54.1.1 67015 1gkuB 1054 2.60e+01 c.37.1.16 65257 c.37.1.16 65258 e.10.1.1 65259 1dxy 333 2.64e+01 1dxy c.2.1.4 30094 c.23.12.1 31354 1eemA 241 2.70e+01 1eemA a.45.1.1 17717 c.47.1.5 33011 1dbgA 506 2.70e+01 1dbgA b.80.1.4 28033 1qh8A 478 2.71e+01 1qguA c.92.2.3 35633 1qguA 478 2.74e+01 1qguA c.92.2.3 35625 1irxA 523 2.75e+01 1pii 452 2.81e+01 1pii c.1.2.4 28559 c.1.2.4 28563 1lkzA 219 2.84e+01 1b25A 619 2.87e+01 1b25A a.110.1.1 19044 d.152.1.1 41796 1eudA 311 2.94e+01 2scuA c.2.1.8 30312 c.23.4.1 31140 2pgd 482 2.95e+01 2pgd a.100.1.1 18778 c.2.1.6 30190 1rl6A 177 3.00e+01 1rl6A d.141.1.1 41473 d.141.1.1 41474 1icpA 376 3.04e+01 1oyc c.1.4.1 62270 1erv 105 3.06e+01 1erv c.47.1.1 32743 3dni 260 3.15e+01 3dni d.151.1.1 41791 3ncmA 92 3.17e+01 3ncmA b.1.1.4 21702 1k32A 1045 3.19e+01 b.36.1.3 68068 b.68.7.1 68069 b.69.9.1 68070 c.14.1.2 68071 1l9vA 317 3.25e+01 1lbvA 252 3.26e+01 1ekjB 221 3.30e+01 1ekjB c.53.2.1 33365 1ekjA 221 3.31e+01 1ekjB c.53.2.1 33364 1kc0A 299 3.49e+01 1gmxA 108 3.49e+01 c.46.1.3 65355 1kdoA 227 3.50e+01 c.37.1.1 68478 2dnjA 260 3.57e+01 3dni d.151.1.1 41790 1ewkA 490 3.57e+01 1ewkA c.93.1.1 35712 1ek6A 348 3.58e+01 1xel c.2.1.2 29800 1bix 287 3.58e+01 1bix d.151.1.1 41781 1mdiA 105 3.68e+01 1erv c.47.1.1 32755 1tmy 120 3.69e+01 1dbwA c.23.1.1 31083 1pszA 303 3.79e+01 1toaA c.92.2.2 35600 1moq 368 3.88e+01 1moq c.80.1.1 35302 2cmkA 227 3.90e+01 1ckeA c.37.1.1 31847 1bnkA 216 3.93e+01 1bnkA b.46.1.2 25765 1ckeA 227 3.95e+01 1ckeA c.37.1.1 31846 1gps 47 3.96e+01 1gpt g.3.7.5 44176 1kgsA 225 3.97e+01 a.4.6.1 68596 c.23.1.1 68597