# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1dhn	121	1.67e-24	1dhn	d.96.1.3	40663
1b9lA	120	1.34e-20	1b9lA	d.96.1.3	40665
1a6q	382	1.23e-01	1a6q	d.158.1.1	42063
1cz1A	394	2.07e+00	1cz1A	c.1.8.3	28839
1eqcA	394	2.08e+00	1cz1A	c.1.8.3	28811
1kdxA	81	3.73e+00	1kdxA	a.12.1.1	16375
1ef1A	294	4.45e+00	1ef1A	a.11.2.1	16368
				b.55.1.5	27003
				d.15.1.4	37611
1uox	296	4.95e+00	1uox	d.96.1.4	40673
				d.96.1.4	40674
1cc1L	498	5.74e+00	1h2rL	e.18.1.1	43301
1tin	69	7.86e+00	2sniI	d.40.1.1	38580
1pmaA	233	8.84e+00	1pmaA	d.153.1.4	41918
1knb	196	9.61e+00	1qhvA	b.21.1.1	23841
1qo7A	394	1.62e+01	1qo7A	c.69.1.11	34697
2arcB	164	1.80e+01	2arcA	b.82.4.1	28149
1eokA	290	1.82e+01	1eokA	c.1.8.5	28991
1emsA	440	1.97e+01	1emsA	d.13.1.1	37520
				d.160.1.1	42086
1cpzA	68	2.13e+01	1aw0	d.58.17.1	39351
1gthB	1025	2.26e+01			
1is8A	230	2.32e+01		d.96.1.1	66321
1broA	277	2.41e+01	1brt	c.69.1.12	34700
1gd8A	118	2.46e+01		d.188.1.1	60445
1jjiA	311	2.76e+01		c.69.1.2	66766
2dkb	433	2.80e+01	2dkb	c.67.1.4	34438
1d7uA	433	2.80e+01	2dkb	c.67.1.4	34439
1lldA	319	2.95e+01	3ldh	c.2.1.5	30177
				d.162.1.1	42144
1e8xA	961	2.99e+01	1e8xA	a.118.1.6	19148
				b.7.1.1	23183
				d.15.1.5	37631
				d.144.1.4	41711
1bmlC	362	3.11e+01	1bmlC	d.15.5.1	37729
				d.15.5.1	37730
				d.15.5.1	37731
1b9zA	516	3.29e+01	1b9zA	b.3.1.1	22528
				c.1.8.2	28798
1gtmA	419	3.47e+01	1hwyA	c.2.1.7	30223
				c.58.1.1	33871
1e7uA	961	3.58e+01	1e8xA	a.118.1.6	19147
				b.7.1.1	23182
				d.15.1.5	37630
				d.144.1.4	41710
1g2oA	268	3.60e+01	1b8oA	c.56.2.1	60228
2arcA	164	3.65e+01	2arcA	b.82.4.1	28148
1j5pA	253	3.70e+01			
1brt	277	3.80e+01	1brt	c.69.1.12	34699
1lfaA	187	3.81e+01	1ido	c.62.1.1	34122
1dseA	292	3.95e+01	1ryc	a.93.1.1	59130