# List of top-scoring protein chains for t2k-100-30-str hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1dhn	121	1.03e-21	1dhn	d.96.1.3	40663
1b9lA	120	1.14e-18	1b9lA	d.96.1.3	40665
1a6q	382	4.73e-02	1a6q	d.158.1.1	42063
1is8A	230	1.31e+00		d.96.1.1	66321
1kdxA	81	1.64e+00	1kdxA	a.12.1.1	16375
1jjiA	311	1.89e+00		c.69.1.2	66766
1uox	296	2.02e+00	1uox	d.96.1.4	40673
				d.96.1.4	40674
1pmaA	233	2.78e+00	1pmaA	d.153.1.4	41918
1ftrA	296	4.16e+00	1ftrA	d.58.33.1	39485
				d.58.33.1	39486
1efuB	282	5.79e+00	1efuB	a.5.2.2	58975
				d.43.1.1	58976
				d.43.1.1	38677
1go4A	205	6.84e+00			
5bcaA	516	9.68e+00	1b9zA	b.3.1.1	22529
				c.1.8.2	28799
1guzA	310	1.01e+01		c.2.1.5	65586
				d.162.1.1	65587
1ef1A	294	1.05e+01	1ef1A	a.11.2.1	16368
				b.55.1.5	27003
				d.15.1.4	37611
1emsA	440	1.19e+01	1emsA	d.13.1.1	37520
				d.160.1.1	42086
1i7fA	292	1.26e+01	1i7fA	d.193.1.1	61888
1hw7A	255	1.39e+01	1i7fA	d.193.1.1	61297
1b35C	282	1.65e+01	1b35C	b.10.1.3	23335
1k92A	455	1.90e+01		c.26.2.1	68325
				d.210.1.1	68326
1ca1	370	1.91e+01	1ca1	a.124.1.1	19340
				b.12.1.3	23648
1rypJ	204	1.94e+01		d.153.1.4	41878
1gpeA	587	2.00e+01	1gpeA	c.3.1.2	30387
				d.16.1.4	37951
1lldA	319	2.09e+01	3ldh	c.2.1.5	30177
				d.162.1.1	42144
1amuA	563	2.09e+01	1amuA	e.23.1.1	43351
1iqqA	200	2.17e+01		d.124.1.1	66274
1b9zA	516	2.18e+01	1b9zA	b.3.1.1	22528
				c.1.8.2	28798
1hyhA	309	2.30e+01	1hyhA	c.2.1.5	30150
				d.162.1.1	42117
1ryp2	233	2.31e+01	1ryp2		
1bev1	281	2.36e+01	1aym1		
1ihoA	283	2.42e+01	1ihoA	c.26.1.4	62390
1dkuA	317	2.55e+01	1dkuA	c.61.1.2	34118
				c.61.1.2	34119
1qpaA	345	2.72e+01	1arv	a.93.1.1	18585
1gd8A	118	2.82e+01		d.188.1.1	60445
1h6oA	204	2.88e+01		a.146.1.1	60689
1dkrA	317	3.09e+01	1dkuA	c.61.1.2	34114
				c.61.1.2	34115
1auvA	311	3.14e+01	1auvA	c.30.1.5	31723
				d.142.1.3	41558
1tfe	145	3.35e+01	1tfe	d.43.1.1	38680
1aye	401	3.56e+01	1aye	c.56.5.1	33824
				d.58.3.1	39065
1gtmA	419	3.68e+01	1hwyA	c.2.1.7	30223
				c.58.1.1	33871
2mbr	340	3.68e+01	2mbr	d.145.1.2	41749
				d.146.1.1	41762
1d7uA	433	3.79e+01	2dkb	c.67.1.4	34439
1eylA	186	3.85e+01	1wba	b.42.4.1	25593
1b10A	142	3.85e+01	1b10A	d.6.1.1	37306