# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1dhn	121	5.05e-24	1dhn	d.96.1.3	40663
1b9lA	120	1.88e-20	1b9lA	d.96.1.3	40665
1a6q	382	1.72e-01	1a6q	d.158.1.1	42063
1cc1L	498	2.43e+00	1h2rL	e.18.1.1	43301
1ef1A	294	3.01e+00	1ef1A	a.11.2.1	16368
				b.55.1.5	27003
				d.15.1.4	37611
1pmaA	233	3.02e+00	1pmaA	d.153.1.4	41918
1tin	69	5.21e+00	2sniI	d.40.1.1	38580
5bcaA	516	5.77e+00	1b9zA	b.3.1.1	22529
				c.1.8.2	28799
1kdxA	81	6.15e+00	1kdxA	a.12.1.1	16375
1cpzA	68	8.83e+00	1aw0	d.58.17.1	39351
1e7uA	961	1.07e+01	1e8xA	a.118.1.6	19147
				b.7.1.1	23182
				d.15.1.5	37630
				d.144.1.4	41710
1k6wA	426	1.18e+01		b.92.1.2	68236
				c.1.9.5	68237
1uox	296	1.21e+01	1uox	d.96.1.4	40673
				d.96.1.4	40674
1e8xA	961	1.42e+01	1e8xA	a.118.1.6	19148
				b.7.1.1	23183
				d.15.1.5	37631
				d.144.1.4	41711
1gtmA	419	1.42e+01	1hwyA	c.2.1.7	30223
				c.58.1.1	33871
1g2oA	268	1.71e+01	1b8oA	c.56.2.1	60228
1pmaP	211	1.81e+01	1pmaP	d.153.1.4	41863
1h6oA	204	1.91e+01		a.146.1.1	60689
1b9zA	516	1.99e+01	1b9zA	b.3.1.1	22528
				c.1.8.2	28798
1gd8A	118	2.00e+01		d.188.1.1	60445
1is8A	230	2.06e+01		d.96.1.1	66321
1lfaA	187	2.12e+01	1ido	c.62.1.1	34122
2dorA	311	2.19e+01	2dorA	c.1.4.1	28593
1eqcA	394	2.20e+01	1cz1A	c.1.8.3	28811
1dorA	311	2.21e+01	2dorA	c.1.4.1	28595
1cz1A	394	2.28e+01	1cz1A	c.1.8.3	28839
1brt	277	2.33e+01	1brt	c.69.1.12	34699
1knb	196	2.40e+01	1qhvA	b.21.1.1	23841
1jjiA	311	2.74e+01		c.69.1.2	66766
1jnuA	104	3.14e+01			
1dkuA	317	3.32e+01	1dkuA	c.61.1.2	34118
				c.61.1.2	34119
1rypJ	204	3.52e+01		d.153.1.4	41878
1bmlC	362	3.55e+01	1bmlC	d.15.5.1	37729
				d.15.5.1	37730
				d.15.5.1	37731
1dkrA	317	3.75e+01	1dkuA	c.61.1.2	34114
				c.61.1.2	34115
1f32A	149	3.76e+01	1f32A	d.62.1.1	39539