# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dhn 121 9.04e-25 1dhn d.96.1.3 40663 1b9lA 120 9.41e-21 1b9lA d.96.1.3 40665 1a6q 382 6.12e-02 1a6q d.158.1.1 42063 1kdxA 81 7.01e-01 1kdxA a.12.1.1 16375 5bcaA 516 1.03e+00 1b9zA b.3.1.1 22529 c.1.8.2 28799 1b9zA 516 2.33e+00 1b9zA b.3.1.1 22528 c.1.8.2 28798 1emsA 440 2.46e+00 1emsA d.13.1.1 37520 d.160.1.1 42086 1tin 69 2.59e+00 2sniI d.40.1.1 38580 1pmaA 233 3.07e+00 1pmaA d.153.1.4 41918 1eqcA 394 3.36e+00 1cz1A c.1.8.3 28811 1cz1A 394 3.64e+00 1cz1A c.1.8.3 28839 1jjiA 311 5.10e+00 c.69.1.2 66766 1ftrA 296 5.41e+00 1ftrA d.58.33.1 39485 d.58.33.1 39486 1uox 296 5.59e+00 1uox d.96.1.4 40673 d.96.1.4 40674 1g2oA 268 8.40e+00 1b8oA c.56.2.1 60228 1rypJ 204 1.33e+01 d.153.1.4 41878 1gd8A 118 1.44e+01 d.188.1.1 60445 1eokA 290 1.56e+01 1eokA c.1.8.5 28991 1a3c 181 1.77e+01 1a3c c.61.1.1 34095 1brt 277 1.83e+01 1brt c.69.1.12 34699 1bmlC 362 1.88e+01 1bmlC d.15.5.1 37729 d.15.5.1 37730 d.15.5.1 37731 1hw7A 255 1.89e+01 1i7fA d.193.1.1 61297 1broA 277 1.93e+01 1brt c.69.1.12 34700 1a0i 348 1.99e+01 1a0i b.40.4.6 25363 d.142.2.1 41577 3mag 307 2.10e+01 3mag c.66.1.9 34205 1v39 322 2.14e+01 3mag c.66.1.9 34206 1vp9 322 2.14e+01 3mag c.66.1.9 34210 1knb 196 2.18e+01 1qhvA b.21.1.1 23841 1i7fA 292 2.28e+01 1i7fA d.193.1.1 61888 1e8yA 966 2.29e+01 1e8xA a.118.1.6 19152 b.7.1.1 23187 d.15.1.5 37635 d.144.1.4 41715 1amuA 563 2.34e+01 1amuA e.23.1.1 43351 1vpt 348 2.41e+01 3mag c.66.1.9 34207 1a31A 538 2.42e+01 1a36A d.163.1.2 42170 e.15.1.1 43263 1g0cA 364 2.42e+01 7a3hA c.1.8.3 60165 1is8A 230 2.47e+01 d.96.1.1 66321 1nsyA 271 2.57e+01 2nsyA c.26.2.1 31614 1kqpA 271 2.57e+01 1qf5A 431 2.60e+01 1adeA c.37.1.10 32212 2nsyA 271 2.60e+01 2nsyA c.26.2.1 31612 1ih8A 271 2.61e+01 2nsyA c.26.2.1 62377 1en7A 157 2.63e+01 1en7A a.140.4.1 64733 d.4.1.5 64734 1tfe 145 2.71e+01 1tfe d.43.1.1 38680 1lldA 319 2.77e+01 3ldh c.2.1.5 30177 d.162.1.1 42144 1adeA 431 2.86e+01 1adeA c.37.1.10 32213 1dfeA 37 2.97e+01 1dfeA g.42.1.1 45318 1bev1 281 3.04e+01 1aym1 1j5pA 253 3.09e+01 1k82A 268 3.15e+01 1bzyA 217 3.16e+01 1qk3A c.61.1.1 34071 1dkuA 317 3.26e+01 1dkuA c.61.1.2 34118 c.61.1.2 34119 1a36A 592 3.38e+01 1a36A a.2.8.1 15715 d.163.1.2 42173 e.15.1.1 43266 1qe5A 266 3.39e+01 1b8oA c.56.2.1 33784 1jdc 429 3.43e+01 1jdc b.71.1.1 27789 c.1.8.1 28776 1qh3A 260 3.48e+01 1qh5A d.157.1.2 42059 1qpaA 345 3.50e+01 1arv a.93.1.1 18585 1d2rA 326 3.53e+01 1d2rB c.26.1.1 31572 1dgzA 37 3.54e+01 1dfeA g.42.1.1 45319 1e8xA 961 3.60e+01 1e8xA a.118.1.6 19148 b.7.1.1 23183 d.15.1.5 37631 d.144.1.4 41711 1cc1L 498 3.62e+01 1h2rL e.18.1.1 43301 1qh5A 260 3.63e+01 1qh5A d.157.1.2 42057 1ede 310 3.63e+01 1b6g c.69.1.8 34662 1pse 69 3.64e+01 1pse b.34.4.2 24595 1b7gO 340 3.77e+01 1b7gO c.2.1.3 29992 d.81.1.1 39907 1fmcA 255 3.82e+01 1cydA c.2.1.2 29856 2dorA 311 4.00e+01 2dorA c.1.4.1 28593