PFRMAT SS TARGET T0154 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0154.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 44 METHOD MODEL 1 M C 0.727 T C 0.635 I C 0.524 P C 0.472 A C 0.363 F C 0.435 H T 0.468 P T 0.588 G T 0.584 E T 0.411 L C 0.386 N E 0.517 V E 0.779 Y E 0.734 S E 0.465 A C 0.663 P H 0.975 G H 0.977 D H 0.974 V H 0.989 A H 0.991 D H 0.986 V H 0.963 S H 0.963 R H 0.971 A H 0.972 L H 0.963 R H 0.968 L H 0.963 T H 0.890 G C 0.901 R C 0.836 R C 0.430 V E 0.837 M E 0.865 L E 0.857 V E 0.511 P H 0.407 T H 0.677 M H 0.948 G H 0.961 A H 0.941 L H 0.964 H H 0.981 E H 0.965 G H 0.970 H H 0.993 L H 0.998 A H 0.998 L H 0.998 V H 0.998 R H 0.998 A H 0.998 A H 0.997 K H 0.993 R H 0.951 V H 0.609 P T 0.818 G T 0.946 S T 0.874 V E 0.891 V E 0.980 V E 0.987 V E 0.985 S E 0.963 I E 0.916 F E 0.836 V E 0.508 N T 0.469 P T 0.521 M T 0.384 Q E 0.381 F C 0.619 G C 0.662 A C 0.596 G C 0.469 E T 0.304 D C 0.315 L H 0.509 D H 0.455 A T 0.508 Y T 0.581 P T 0.562 R T 0.516 T C 0.553 P H 0.962 D H 0.978 D H 0.975 D H 0.989 L H 0.999 A H 0.998 Q H 0.998 L H 0.996 R H 0.995 A H 0.974 E H 0.852 G C 0.932 V C 0.887 E C 0.577 I E 0.926 A E 0.952 F E 0.917 T E 0.720 P C 0.576 T C 0.699 T G 0.520 A G 0.621 A G 0.690 M C 0.254 Y T 0.574 P T 0.739 D T 0.823 G T 0.814 L T 0.410 R C 0.513 T E 0.520 T E 0.702 V E 0.635 Q C 0.427 P C 0.403 G T 0.449 P T 0.489 L T 0.388 A T 0.378 A T 0.293 E H 0.248 L T 0.270 E T 0.300 G C 0.435 G T 0.434 P C 0.431 R T 0.544 P T 0.560 T T 0.494 H T 0.447 F T 0.353 A H 0.419 G H 0.656 V H 0.988 L H 0.995 T H 0.999 V H 0.999 V H 0.998 L H 0.997 K H 0.995 L H 0.989 L H 0.939 Q H 0.785 I H 0.609 V C 0.511 R C 0.570 P T 0.462 D T 0.540 R H 0.436 V H 0.513 F H 0.595 F T 0.407 G C 0.436 E T 0.479 K T 0.462 D H 0.356 Y H 0.642 Q H 0.835 Q H 0.927 L H 0.986 V H 0.991 L H 0.991 I H 0.991 R H 0.992 Q H 0.991 L H 0.985 V H 0.970 A H 0.918 D H 0.865 F H 0.754 N C 0.864 L C 0.757 D C 0.504 V E 0.826 A E 0.964 V E 0.974 V E 0.920 G E 0.836 V E 0.541 P C 0.438 T E 0.387 V E 0.598 R E 0.701 E E 0.437 A T 0.702 D T 0.844 G T 0.767 L C 0.314 A E 0.331 M E 0.352 S T 0.461 S T 0.586 R T 0.516 N T 0.440 R E 0.336 Y C 0.421 L C 0.704 D C 0.805 P H 0.824 A H 0.811 Q H 0.883 R H 0.942 A H 0.955 A H 0.959 A H 0.940 V H 0.973 A H 0.966 L H 0.973 S H 0.981 A H 0.983 A H 0.989 L H 0.996 T H 0.995 A H 0.996 A H 0.995 A H 0.995 H H 0.992 A H 0.987 A H 0.983 T H 0.964 A H 0.866 G C 0.684 A C 0.540 Q C 0.423 A C 0.522 A H 0.892 L H 0.943 D H 0.965 A H 0.974 A H 0.976 R H 0.980 A H 0.986 V H 0.971 L H 0.933 D H 0.870 A H 0.773 A T 0.537 P T 0.733 G T 0.777 V T 0.606 A E 0.545 V E 0.770 D E 0.838 Y E 0.973 L E 0.982 E E 0.980 L E 0.969 R E 0.835 D E 0.401 I T 0.630 G T 0.610 L T 0.595 G T 0.501 P C 0.510 M C 0.452 P T 0.408 L T 0.435 N T 0.447 G T 0.568 S T 0.409 G E 0.866 R E 0.978 L E 0.988 L E 0.993 V E 0.982 A E 0.931 A E 0.927 R E 0.902 L E 0.735 G T 0.582 T T 0.593 T E 0.455 R E 0.678 L E 0.844 L E 0.808 D E 0.769 N E 0.554 I E 0.565 A E 0.588 I E 0.475 E T 0.439 I T 0.638 G T 0.688 T T 0.463 F E 0.334 A C 0.397 G T 0.366 T T 0.486 D T 0.483 R T 0.525 P T 0.459 D C 0.618 G H 0.649 Y H 0.879 R H 0.989 A H 0.989 I H 0.981 L H 0.967 E H 0.956 S H 0.889 H H 0.717 W H 0.567 R C 0.542 N C 0.948 END