PFRMAT SS TARGET T0154 AUTHOR 4069-6308-1312 METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 7 (1 EBGHSTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0154.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 44 METHOD MODEL 1 M C 0.999 T C 0.853 I C 0.834 P C 0.716 A C 0.531 F C 0.397 H C 0.664 P T 0.345 G S 0.310 E C 0.387 L C 0.466 N E 0.580 V E 0.735 Y E 0.755 S E 0.486 A C 0.536 P H 0.949 G H 0.980 D H 0.984 V H 0.994 A H 0.994 D H 0.991 V H 0.990 S H 0.988 R H 0.980 A H 0.979 L H 0.976 R H 0.953 L H 0.868 T T 0.741 G T 0.854 R C 0.735 R E 0.464 V E 0.858 M E 0.899 L E 0.931 V E 0.774 P C 0.491 T C 0.543 M C 0.401 G S 0.328 A G 0.298 L H 0.468 H H 0.691 E H 0.819 G H 0.879 H H 0.982 L H 0.996 A H 0.997 L H 0.996 V H 0.996 R H 0.994 A H 0.983 A H 0.947 K H 0.783 R H 0.514 V C 0.336 P T 0.325 G S 0.431 S S 0.509 V E 0.740 V E 0.994 V E 0.997 V E 0.989 S E 0.942 I E 0.735 F E 0.677 V E 0.501 N C 0.664 P G 0.472 M G 0.625 Q G 0.640 F C 0.354 G C 0.630 A T 0.356 G C 0.270 E S 0.436 D C 0.710 L G 0.570 D G 0.450 A G 0.416 Y S 0.630 P C 0.490 R S 0.364 T C 0.606 P H 0.747 D H 0.889 D H 0.893 D H 0.977 L H 0.988 A H 0.983 Q H 0.986 L H 0.990 R H 0.976 A H 0.930 E T 0.663 G T 0.972 V C 0.947 E E 0.525 I E 0.990 A E 0.994 F E 0.992 T E 0.850 P C 0.458 T C 0.698 T G 0.622 A G 0.593 A G 0.678 M H 0.445 Y C 0.306 P T 0.334 D T 0.700 G T 0.523 L C 0.510 R E 0.627 T E 0.865 T E 0.900 V E 0.815 Q E 0.551 P C 0.518 G C 0.388 P C 0.272 L H 0.383 A H 0.426 A H 0.436 E H 0.527 L H 0.455 E T 0.508 G T 0.383 G C 0.540 P C 0.471 R C 0.516 P T 0.373 T T 0.407 H H 0.381 F H 0.667 A H 0.862 G H 0.930 V H 0.984 L H 0.995 T H 0.997 V H 0.995 V H 0.994 L H 0.988 K H 0.963 L H 0.891 L H 0.751 Q H 0.485 I T 0.439 V S 0.456 R C 0.661 P C 0.420 D S 0.431 R E 0.560 V E 0.556 F E 0.462 F C 0.337 G S 0.302 E H 0.596 K H 0.856 D H 0.943 Y H 0.975 Q H 0.989 Q H 0.996 L H 0.997 V H 0.998 L H 0.999 I H 0.999 R H 0.999 Q H 0.997 L H 0.994 V H 0.988 A H 0.959 D H 0.831 F T 0.493 N T 0.533 L C 0.724 D C 0.574 V E 0.717 A E 0.946 V E 0.955 V E 0.902 G E 0.703 V C 0.444 P E 0.518 T E 0.792 V E 0.808 R E 0.789 E C 0.464 A T 0.617 D T 0.775 G S 0.429 L C 0.486 A E 0.747 M E 0.773 S E 0.667 S E 0.554 R E 0.265 N C 0.274 R C 0.308 Y C 0.402 L C 0.880 D C 0.981 P H 0.967 A H 0.964 Q H 0.969 R H 0.987 A H 0.960 A H 0.935 A H 0.944 V H 0.955 A H 0.969 L H 0.985 S H 0.992 A H 0.989 A H 0.990 L H 0.989 T H 0.979 A H 0.970 A H 0.967 A H 0.972 H H 0.974 A H 0.973 A H 0.965 T H 0.887 A T 0.616 G T 0.703 A C 0.511 Q C 0.403 A C 0.469 A H 0.883 L H 0.976 D H 0.986 A H 0.990 A H 0.988 R H 0.976 A H 0.964 V H 0.953 L H 0.928 D H 0.819 A H 0.751 A H 0.395 P T 0.549 G T 0.761 V C 0.488 A C 0.625 V C 0.678 D S 0.444 Y E 0.989 L E 0.998 E E 0.998 L E 0.986 R E 0.834 D C 0.557 I T 0.499 G T 0.781 L T 0.471 G C 0.454 P C 0.646 M C 0.541 P C 0.574 L C 0.589 N C 0.441 G S 0.448 S C 0.354 G E 0.683 R E 0.913 L E 0.963 L E 0.960 V E 0.950 A E 0.928 A E 0.851 R E 0.712 L E 0.445 G T 0.520 T T 0.342 T E 0.567 R E 0.845 L E 0.824 L E 0.820 D E 0.602 N E 0.449 I E 0.614 A E 0.721 I E 0.628 E C 0.536 I T 0.568 G T 0.556 T C 0.273 F C 0.376 A C 0.359 G C 0.326 T C 0.483 D C 0.444 R C 0.725 P T 0.410 D T 0.576 G S 0.281 Y H 0.566 R H 0.624 A H 0.645 I H 0.605 L H 0.542 E H 0.527 S H 0.437 H H 0.339 W H 0.262 R C 0.605 N C 0.996 END