PFRMAT SS
TARGET T0154
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0154.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 44
METHOD
MODEL 1
M E 0.344
T E 0.330
I E 0.279
P E 0.254
A E 0.282
F E 0.271
H E 0.336
P H 0.271
G H 0.225
E B 0.350
L E 0.360
N E 0.526
V E 0.386
Y E 0.318
S H 0.182
A B 0.536
P H 0.702
G H 0.923
D H 0.891
V H 0.933
A H 0.952
D H 0.967
V H 0.955
S H 0.923
R H 0.913
A H 0.928
L H 0.908
R H 0.775
L H 0.754
T B 0.696
G S 0.715
R B 0.620
R E 0.486
V E 0.366
M E 0.414
L E 0.454
V B 0.368
P E 0.214
T B 0.199
M I 0.320
G H 0.451
A H 0.604
L H 0.567
H H 0.459
E H 0.529
G H 0.402
H H 0.778
L H 0.882
A H 0.931
L H 0.935
V H 0.942
R H 0.915
A H 0.863
A H 0.672
K H 0.593
R S 0.495
V E 0.264
P H 0.300
G S 0.306
S G 0.213
V E 0.731
V E 0.762
V E 0.620
V E 0.569
S E 0.429
I A 0.274
F E 0.436
V B 0.317
N E 0.573
P I 0.619
M S 0.493
Q E 0.271
F H 0.144
G C 0.410
A H 0.212
G S 0.332
E B 0.246
D E 0.236
L I 0.572
D H 0.442
A H 0.285
Y E 0.172
P H 0.168
R B 0.222
T B 0.347
P H 0.353
D H 0.785
D H 0.888
D H 0.831
L H 0.840
A H 0.945
Q H 0.932
L H 0.928
R H 0.800
A H 0.798
E B 0.612
G T 0.493
V E 0.426
E F 0.253
I E 0.506
A E 0.646
F E 0.490
T E 0.332
P B 0.240
T B 0.460
T I 0.644
A H 0.473
A H 0.437
M H 0.261
Y E 0.161
P H 0.204
D B 0.302
G S 0.431
L E 0.305
R E 0.331
T E 0.470
T E 0.518
V E 0.479
Q E 0.443
P B 0.235
G H 0.199
P S 0.230
L S 0.239
A H 0.254
A H 0.295
E H 0.375
L S 0.193
E B 0.186
G S 0.304
G B 0.244
P B 0.175
R B 0.263
P G 0.172
T S 0.230
H E 0.156
F E 0.214
A S 0.188
G C 0.276
V H 0.267
L H 0.316
T E 0.425
V H 0.334
V H 0.578
L H 0.579
K H 0.550
L H 0.519
L H 0.401
Q H 0.446
I H 0.396
V E 0.252
R E 0.333
P E 0.244
D H 0.237
R E 0.234
V E 0.311
F A 0.236
F B 0.258
G S 0.272
E H 0.239
K H 0.471
D H 0.474
Y H 0.773
Q H 0.917
Q H 0.876
L H 0.934
V H 0.937
L H 0.972
I H 0.944
R H 0.927
Q H 0.933
L H 0.919
V H 0.787
A H 0.722
D H 0.528
F B 0.528
N S 0.329
L B 0.432
D E 0.264
V E 0.580
A E 0.690
V E 0.433
V E 0.430
G E 0.244
V B 0.428
P H 0.209
T E 0.263
V E 0.284
R B 0.425
E C 0.460
A H 0.501
D B 0.624
G S 0.576
L B 0.442
A E 0.362
M E 0.236
S B 0.232
S H 0.338
R G 0.171
N E 0.394
R I 0.269
Y S 0.387
L B 0.550
D B 0.494
P H 0.749
A H 0.921
Q H 0.834
R H 0.941
A H 0.911
A H 0.810
A H 0.890
V H 0.919
A H 0.939
L H 0.950
S H 0.956
A H 0.960
A H 0.960
L H 0.946
T H 0.962
A H 0.957
A H 0.947
A H 0.945
H H 0.965
A H 0.953
A H 0.835
T H 0.816
A B 0.685
G S 0.613
A H 0.198
Q H 0.365
A B 0.276
A H 0.782
L H 0.924
D H 0.929
A H 0.934
A H 0.945
R H 0.944
A H 0.921
V H 0.827
L H 0.734
D H 0.683
A H 0.368
A H 0.182
P H 0.286
G S 0.519
V E 0.358
A E 0.490
V A 0.429
D G 0.498
Y E 0.506
L E 0.578
E E 0.650
L A 0.542
R F 0.273
D E 0.449
I I 0.472
G G 0.317
L B 0.248
G S 0.226
P B 0.324
M B 0.315
P E 0.198
L E 0.209
N S 0.181
G D 0.204
S S 0.319
G B 0.441
R E 0.700
L E 0.648
L E 0.503
V E 0.585
A E 0.449
A E 0.440
R A 0.302
L D 0.225
G D 0.314
T S 0.190
T E 0.495
R E 0.553
L A 0.428
L E 0.278
D E 0.209
N S 0.212
I E 0.361
A E 0.310
I B 0.386
E C 0.370
I H 0.257
G S 0.312
T S 0.162
F S 0.183
A H 0.158
G S 0.244
T E 0.175
D S 0.178
R B 0.274
P H 0.179
D H 0.260
G H 0.366
Y H 0.493
R H 0.617
A H 0.669
I H 0.659
L H 0.635
E H 0.520
S H 0.419
H H 0.300
W H 0.300
R H 0.237
N E 0.184
END