PFRMAT SS
TARGET T0152
AUTHOR 4069-6308-1312 
METHOD This file is the result of combining several RDB files, specifically
METHOD T0152.t2k.dssp-ebghstl.rdb  (weight 1.53986)
METHOD T0152.t2k.stride-ebghtl.rdb  (weight 1.24869)
METHOD T0152.t2k.str.rdb  (weight 1.53983)
METHOD T0152.t2k.alpha.rdb  (weight 0.659012)
METHOD These files were combined by translating their predictions into EHL
METHOD predictions with tables generated by compare-real, and then combining
METHOD those predictions with weights proportional to their mutual information
METHOD with the EHL alphabet.  The comments from the individual files follow.
METHOD
METHOD Comments from T0152.t2k.dssp-ebghstl.rdb
METHOD ============================================
METHOD TARGET T0152
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0152.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 28
METHOD
METHOD ============================================
METHOD Comments from T0152.t2k.stride-ebghtl.rdb
METHOD ============================================
METHOD TARGET T0152
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0152.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 28
METHOD
METHOD ============================================
METHOD Comments from T0152.t2k.str.rdb
METHOD ============================================
METHOD TARGET T0152
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   13 (1 str )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0152.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 28
METHOD
METHOD ============================================
METHOD Comments from T0152.t2k.alpha.rdb
METHOD ============================================
METHOD TARGET T0152
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0152.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 28
METHOD
METHOD ============================================
MODEL 1
M C 0.91
T C 0.78
K C 0.75
P C 0.72
T C 0.71
S C 0.71
A C 0.75
G C 0.71
Q C 0.63
A C 0.49
D H 0.55
D H 0.55
A H 0.57
L H 0.56
V H 0.60
R H 0.48
L C 0.51
A C 0.54
R C 0.54
E C 0.70
R C 0.80
F C 0.82
D C 0.85
L C 0.90
P C 0.87
D C 0.85
Q C 0.80
V C 0.72
R C 0.66
R C 0.62
L C 0.61
A C 0.71
R C 0.77
P C 0.79
P C 0.74
V C 0.79
P C 0.69
S C 0.69
L C 0.69
E C 0.80
P C 0.82
P C 0.65
Y E 0.70
G E 0.80
L E 0.84
R E 0.75
V E 0.70
A C 0.62
Q C 0.81
L H 0.65
T H 0.70
D H 0.72
A H 0.91
E H 0.92
M H 0.93
L H 0.95
A H 0.95
E H 0.92
W H 0.87
M H 0.73
N H 0.52
R C 0.72
P H 0.65
H H 0.67
L H 0.81
A H 0.84
A H 0.84
A H 0.79
W H 0.66
E H 0.48
Y C 0.64
D C 0.76
W C 0.83
P C 0.79
A H 0.80
S H 0.89
R H 0.91
W H 0.93
R H 0.93
Q H 0.93
H H 0.93
L H 0.93
N H 0.92
A H 0.91
Q H 0.86
L H 0.70
E C 0.57
G C 0.87
T C 0.86
Y C 0.85
S C 0.74
L C 0.54
P E 0.67
L E 0.85
I E 0.89
G E 0.90
S E 0.88
W E 0.76
H C 0.87
G C 0.91
T E 0.51
D E 0.76
G E 0.79
G E 0.86
Y E 0.89
L E 0.89
E E 0.89
L E 0.86
Y E 0.74
W E 0.53
A C 0.57
A C 0.59
K C 0.62
D C 0.72
L C 0.66
I C 0.65
S C 0.63
H C 0.62
Y C 0.60
Y C 0.66
D C 0.71
A C 0.81
D C 0.89
P C 0.85
Y C 0.88
D C 0.77
L C 0.50
G E 0.66
L E 0.77
H E 0.77
A E 0.80
A E 0.78
I E 0.66
A C 0.53
D C 0.76
L C 0.51
S H 0.52
K H 0.48
V C 0.71
N C 0.81
R C 0.67
G C 0.58
F H 0.62
G H 0.82
P H 0.93
L H 0.95
L H 0.95
L H 0.96
P H 0.96
R H 0.96
I H 0.96
V H 0.95
A H 0.95
S H 0.93
V H 0.89
F H 0.74
A C 0.57
N C 0.81
E C 0.88
P C 0.79
R C 0.77
C C 0.60
R E 0.55
R E 0.83
I E 0.87
M E 0.83
F E 0.68
D C 0.66
P C 0.83
D C 0.85
H C 0.63
R C 0.56
N H 0.67
T H 0.90
A H 0.94
T H 0.94
R H 0.95
R H 0.94
L H 0.93
C H 0.89
E H 0.83
W H 0.70
A C 0.61
G C 0.90
C C 0.77
K C 0.51
F E 0.52
L C 0.47
G C 0.48
E E 0.51
H E 0.54
D C 0.53
T C 0.78
T C 0.85
N C 0.87
R C 0.75
R C 0.55
M E 0.56
A E 0.73
L E 0.80
Y E 0.77
A E 0.76
L E 0.59
E C 0.48
A C 0.49
P C 0.44
T H 0.44
T C 0.54
A C 0.69
A C 0.92
END