PFRMAT SS
TARGET T0152
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0152.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 28
METHOD
MODEL 1
M E 0.230
T E 0.195
K B 0.279
P E 0.187
T H 0.198
S B 0.160
A B 0.198
G H 0.202
Q H 0.249
A H 0.326
D H 0.439
D H 0.495
A H 0.454
L H 0.482
V H 0.539
R H 0.379
L H 0.284
A E 0.273
R E 0.215
E B 0.336
R B 0.356
F B 0.278
D B 0.298
L B 0.430
P B 0.285
D B 0.276
Q B 0.158
V B 0.144
R S 0.163
R E 0.238
L B 0.272
A E 0.234
R B 0.266
P B 0.366
P B 0.286
V E 0.352
P H 0.239
S S 0.225
L S 0.171
E D 0.179
P C 0.176
P E 0.353
Y E 0.530
G E 0.540
L E 0.471
R B 0.403
V E 0.367
A B 0.413
Q B 0.630
L H 0.486
T H 0.729
D H 0.549
A H 0.793
E H 0.916
M H 0.921
L H 0.912
A H 0.849
E H 0.838
W H 0.743
M H 0.592
N S 0.494
R B 0.343
P H 0.593
H H 0.587
L H 0.658
A H 0.713
A H 0.702
A H 0.584
W H 0.369
E S 0.232
Y S 0.206
D B 0.157
W B 0.244
P B 0.306
A H 0.625
S H 0.828
R H 0.850
W H 0.875
R H 0.903
Q H 0.908
H H 0.878
L H 0.834
N H 0.783
A H 0.741
Q H 0.551
L H 0.361
E H 0.256
G C 0.194
T I 0.199
Y S 0.371
S E 0.236
L E 0.333
P E 0.485
L E 0.541
I E 0.418
G E 0.486
S A 0.371
W D 0.310
H D 0.490
G S 0.554
T B 0.449
D A 0.323
G E 0.274
G B 0.301
Y E 0.431
L E 0.431
E E 0.546
L E 0.393
Y E 0.268
W E 0.281
A B 0.223
A H 0.358
K S 0.366
D E 0.249
L H 0.229
I S 0.216
S B 0.232
H E 0.174
Y S 0.201
Y B 0.224
D E 0.210
A B 0.253
D C 0.545
P H 0.312
Y S 0.661
D E 0.311
L A 0.174
G D 0.210
L E 0.504
H E 0.410
A E 0.425
A E 0.375
I S 0.229
A C 0.316
D B 0.275
L I 0.365
S H 0.218
K S 0.289
V H 0.191
N S 0.262
R H 0.249
G H 0.291
F H 0.471
G H 0.711
P H 0.880
L H 0.946
L H 0.930
L H 0.940
P H 0.959
R H 0.974
I H 0.944
V H 0.918
A H 0.895
S H 0.813
V H 0.640
F S 0.330
A H 0.366
N S 0.231
E E 0.308
P I 0.308
R S 0.456
C E 0.326
R E 0.207
R E 0.472
I E 0.602
M E 0.540
F E 0.258
D E 0.359
P B 0.182
D B 0.335
H H 0.448
R H 0.410
N H 0.659
T H 0.851
A H 0.944
T H 0.939
R H 0.933
R H 0.947
L H 0.945
C H 0.915
E H 0.794
W H 0.825
A B 0.616
G T 0.379
C E 0.317
K B 0.453
F E 0.291
L E 0.194
G E 0.185
E E 0.337
H E 0.396
D E 0.292
T C 0.251
T H 0.167
N S 0.195
R B 0.197
R A 0.297
M E 0.374
A E 0.631
L E 0.492
Y E 0.552
A A 0.428
L E 0.254
E A 0.205
A B 0.178
P H 0.244
T H 0.321
T H 0.275
A H 0.202
A H 0.199
END