PFRMAT SS TARGET T0151 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0151.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 147 METHOD MODEL 1 M C 0.550 A T 0.404 G C 0.398 D T 0.356 T C 0.382 T E 0.606 I E 0.950 T E 0.991 I E 0.994 V E 0.984 G E 0.934 N E 0.841 L E 0.669 T E 0.457 A T 0.409 D T 0.599 P T 0.638 E T 0.364 L E 0.667 R E 0.680 F E 0.778 T E 0.456 P T 0.809 S T 0.932 G T 0.889 A C 0.361 A E 0.808 V E 0.946 A E 0.978 N E 0.990 F E 0.990 T E 0.988 V E 0.972 A E 0.943 S E 0.803 T E 0.370 P T 0.540 R T 0.470 I T 0.421 Y C 0.312 D T 0.536 R T 0.705 Q T 0.710 T T 0.727 G T 0.452 E C 0.330 W T 0.283 K H 0.247 D C 0.278 G C 0.370 E C 0.629 A C 0.499 L E 0.365 F E 0.545 L E 0.775 R E 0.841 C E 0.848 N E 0.842 I E 0.685 W C 0.263 R H 0.408 E H 0.568 A H 0.805 A H 0.918 E H 0.929 N H 0.930 V H 0.906 A H 0.888 E H 0.848 S H 0.758 L H 0.572 T T 0.611 R T 0.706 G T 0.783 A T 0.583 R E 0.771 V E 0.943 I E 0.982 V E 0.983 S E 0.963 G E 0.906 R E 0.886 L E 0.815 K E 0.806 Q E 0.749 R E 0.560 S E 0.636 F E 0.782 E E 0.819 T T 0.571 R T 0.917 E T 0.961 G T 0.910 E C 0.477 K E 0.908 R E 0.936 T E 0.926 V E 0.905 I E 0.952 E E 0.987 V E 0.990 E E 0.984 V E 0.960 D E 0.825 E E 0.816 I E 0.851 G E 0.832 P E 0.658 S E 0.345 L T 0.391 R T 0.450 Y T 0.425 A T 0.426 T T 0.375 A C 0.362 K C 0.389 V C 0.384 N C 0.436 K C 0.425 A C 0.414 S C 0.390 R T 0.390 S T 0.387 G T 0.393 G T 0.393 F T 0.394 G T 0.409 S T 0.400 G C 0.386 S T 0.402 R T 0.414 P T 0.410 A T 0.438 P T 0.417 A T 0.409 Q T 0.413 T T 0.388 S T 0.383 S T 0.391 A T 0.399 S T 0.401 G T 0.389 D C 0.404 D C 0.413 P T 0.418 W T 0.433 G T 0.403 S C 0.418 A C 0.393 P T 0.500 A T 0.496 S T 0.492 G T 0.484 S T 0.374 F C 0.416 G C 0.440 G C 0.382 G T 0.514 D T 0.516 D T 0.574 E T 0.507 P C 0.526 P C 0.742 F C 0.913 END