PFRMAT SS
TARGET T0151
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with
METHOD window units
METHOD 5 15
METHOD 7 15
METHOD 9 15
METHOD 13 6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0151.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 147
METHOD
MODEL 1
M C 0.550
A T 0.404
G C 0.398
D T 0.356
T C 0.382
T E 0.606
I E 0.950
T E 0.991
I E 0.994
V E 0.984
G E 0.934
N E 0.841
L E 0.669
T E 0.457
A T 0.409
D T 0.599
P T 0.638
E T 0.364
L E 0.667
R E 0.680
F E 0.778
T E 0.456
P T 0.809
S T 0.932
G T 0.889
A C 0.361
A E 0.808
V E 0.946
A E 0.978
N E 0.990
F E 0.990
T E 0.988
V E 0.972
A E 0.943
S E 0.803
T E 0.370
P T 0.540
R T 0.470
I T 0.421
Y C 0.312
D T 0.536
R T 0.705
Q T 0.710
T T 0.727
G T 0.452
E C 0.330
W T 0.283
K H 0.247
D C 0.278
G C 0.370
E C 0.629
A C 0.499
L E 0.365
F E 0.545
L E 0.775
R E 0.841
C E 0.848
N E 0.842
I E 0.685
W C 0.263
R H 0.408
E H 0.568
A H 0.805
A H 0.918
E H 0.929
N H 0.930
V H 0.906
A H 0.888
E H 0.848
S H 0.758
L H 0.572
T T 0.611
R T 0.706
G T 0.783
A T 0.583
R E 0.771
V E 0.943
I E 0.982
V E 0.983
S E 0.963
G E 0.906
R E 0.886
L E 0.815
K E 0.806
Q E 0.749
R E 0.560
S E 0.636
F E 0.782
E E 0.819
T T 0.571
R T 0.917
E T 0.961
G T 0.910
E C 0.477
K E 0.908
R E 0.936
T E 0.926
V E 0.905
I E 0.952
E E 0.987
V E 0.990
E E 0.984
V E 0.960
D E 0.825
E E 0.816
I E 0.851
G E 0.832
P E 0.658
S E 0.345
L T 0.391
R T 0.450
Y T 0.425
A T 0.426
T T 0.375
A C 0.362
K C 0.389
V C 0.384
N C 0.436
K C 0.425
A C 0.414
S C 0.390
R T 0.390
S T 0.387
G T 0.393
G T 0.393
F T 0.394
G T 0.409
S T 0.400
G C 0.386
S T 0.402
R T 0.414
P T 0.410
A T 0.438
P T 0.417
A T 0.409
Q T 0.413
T T 0.388
S T 0.383
S T 0.391
A T 0.399
S T 0.401
G T 0.389
D C 0.404
D C 0.413
P T 0.418
W T 0.433
G T 0.403
S C 0.418
A C 0.393
P T 0.500
A T 0.496
S T 0.492
G T 0.484
S T 0.374
F C 0.416
G C 0.440
G C 0.382
G T 0.514
D T 0.516
D T 0.574
E T 0.507
P C 0.526
P C 0.742
F C 0.913
END