PFRMAT SS
TARGET T0151
AUTHOR 4069-6308-1312
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with
METHOD window units
METHOD 5 15
METHOD 7 15
METHOD 9 15
METHOD 13 7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0151.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 147
METHOD
MODEL 1
M C 0.976
A C 0.642
G C 0.402
D C 0.478
T C 0.444
T E 0.767
I E 0.973
T E 0.988
I E 0.983
V E 0.910
G E 0.701
N E 0.540
L E 0.315
T T 0.328
A S 0.396
D C 0.609
P T 0.560
E T 0.490
L E 0.392
R E 0.632
F E 0.639
T C 0.766
P T 0.684
S T 0.701
G S 0.805
A C 0.731
A E 0.662
V E 0.953
A E 0.988
N E 0.987
F E 0.985
T E 0.979
V E 0.930
A E 0.721
S E 0.508
T C 0.458
P C 0.380
R C 0.334
I C 0.395
Y E 0.335
D C 0.528
R T 0.528
Q T 0.615
T T 0.371
G C 0.390
E C 0.402
W E 0.486
K E 0.490
D E 0.360
G C 0.403
E C 0.410
A E 0.635
L E 0.765
F E 0.896
L E 0.897
R E 0.871
C E 0.920
N E 0.949
I E 0.795
W E 0.471
R H 0.314
E H 0.613
A H 0.850
A H 0.965
E H 0.980
N H 0.986
V H 0.983
A H 0.972
E H 0.924
S H 0.844
L H 0.686
T H 0.491
R T 0.504
G T 0.442
A C 0.584
R E 0.643
V E 0.956
I E 0.989
V E 0.986
S E 0.961
G E 0.897
R E 0.907
L E 0.884
K E 0.894
Q E 0.859
R E 0.617
S E 0.681
F E 0.700
E E 0.694
T C 0.505
R T 0.684
E T 0.776
G S 0.606
E C 0.511
K E 0.871
R E 0.893
T E 0.940
V E 0.926
I E 0.962
E E 0.988
V E 0.980
E E 0.979
V E 0.926
D E 0.800
E E 0.713
I E 0.629
G E 0.655
P E 0.578
S E 0.315
L C 0.264
R C 0.320
Y C 0.270
A H 0.287
T C 0.275
A H 0.273
K T 0.260
V C 0.309
N C 0.373
K C 0.399
A C 0.344
S C 0.383
R C 0.360
S C 0.341
G C 0.323
G C 0.358
F C 0.339
G C 0.348
S C 0.352
G C 0.325
S C 0.374
R C 0.364
P C 0.330
A C 0.366
P C 0.361
A C 0.310
Q C 0.294
T C 0.351
S C 0.315
S C 0.305
A C 0.333
S C 0.310
G C 0.356
D C 0.391
D C 0.419
P C 0.375
W C 0.390
G C 0.338
S C 0.380
A C 0.376
P C 0.418
A T 0.370
S C 0.307
G C 0.446
S C 0.497
F C 0.496
G C 0.485
G C 0.438
G C 0.462
D C 0.321
D T 0.389
E C 0.351
P C 0.524
P C 0.817
F C 0.957
END