PFRMAT SS
TARGET T0151
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0151.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 147
METHOD
MODEL 1
M H 0.184
A H 0.192
G E 0.198
D E 0.210
T B 0.334
T E 0.348
I E 0.667
T E 0.774
I E 0.475
V S 0.272
G B 0.309
N E 0.255
L E 0.124
T B 0.198
A S 0.210
D E 0.455
P I 0.384
E H 0.199
L A 0.367
R E 0.358
F E 0.437
T C 0.687
P H 0.514
S B 0.573
G S 0.660
A B 0.635
A E 0.509
V E 0.450
A E 0.596
N E 0.502
F E 0.560
T E 0.611
V E 0.516
A A 0.350
S E 0.277
T E 0.242
P I 0.186
R H 0.197
I E 0.218
Y B 0.228
D E 0.280
R H 0.457
Q D 0.162
T B 0.224
G S 0.315
E B 0.243
W E 0.261
K E 0.203
D E 0.180
G B 0.149
E E 0.254
A E 0.326
L E 0.296
F A 0.387
L E 0.431
R E 0.509
C E 0.634
N E 0.564
I A 0.330
W D 0.221
R D 0.276
E H 0.596
A H 0.805
A H 0.888
E H 0.930
N H 0.902
V H 0.848
A H 0.824
E H 0.819
S H 0.591
L H 0.229
T H 0.337
R H 0.276
G S 0.569
A B 0.522
R E 0.509
V E 0.696
I E 0.627
V A 0.450
S S 0.313
G C 0.398
R E 0.406
L A 0.435
K E 0.325
Q A 0.389
R E 0.246
S E 0.395
F E 0.354
E E 0.410
T C 0.601
R H 0.437
E B 0.704
G S 0.663
E B 0.533
K E 0.442
R E 0.403
T E 0.460
V E 0.435
I E 0.548
E E 0.704
V E 0.499
E E 0.496
V A 0.403
D F 0.305
E A 0.314
I E 0.338
G E 0.275
P E 0.239
S H 0.151
L B 0.152
R B 0.214
Y H 0.199
A H 0.168
T H 0.147
A B 0.182
K S 0.139
V S 0.144
N S 0.159
K E 0.150
A H 0.159
S S 0.159
R H 0.157
S B 0.146
G S 0.156
G B 0.145
F H 0.162
G S 0.171
S S 0.149
G H 0.159
S S 0.186
R B 0.163
P H 0.168
A S 0.145
P B 0.182
A H 0.190
Q S 0.186
T B 0.162
S H 0.159
S H 0.165
A H 0.175
S H 0.164
G S 0.187
D B 0.169
D B 0.180
P B 0.181
W E 0.176
G H 0.220
S B 0.190
A B 0.216
P B 0.182
A H 0.249
S S 0.272
G B 0.189
S B 0.217
F E 0.179
G B 0.239
G B 0.175
G B 0.179
D H 0.196
D H 0.278
E S 0.365
P B 0.390
P B 0.292
F E 0.267
END