# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qvcA 145 9.97e-24 3ullA b.40.4.3 25284 1kawA 135 4.93e-19 3ullA b.40.4.3 25288 3ullA 132 1.09e-15 3ullA b.40.4.3 25282 1je5A 206 6.08e-02 1je5A b.40.4.7 62909 1bfeA 119 7.12e-02 1pdr b.36.1.1 24775 1pdr 99 9.00e-02 1pdr b.36.1.1 24771 1otcA 495 1.56e-01 1otcA b.40.4.3 25307 b.40.4.3 25308 b.40.4.3 25309 1be9A 119 1.58e-01 1pdr b.36.1.1 24774 1jb7A 495 1.84e-01 1otcA b.40.4.3 62836 b.40.4.3 62837 b.40.4.3 62838 1a8p 258 6.94e-01 1fdr b.43.4.2 25654 c.25.1.1 31544 1be1 137 8.90e-01 1be1 c.23.6.1 31237 1d1nA 99 1.03e+00 1d1nA b.43.3.1 25718 1j8mF 297 1.14e+00 1ng1 a.24.13.1 62742 c.37.1.10 62743 1qg0A 308 1.90e+00 1fnc b.43.4.2 25639 c.25.1.1 31529 1pkn 530 2.12e+00 1a49A b.58.1.1 27042 c.1.12.1 29271 c.49.1.1 33125 1ndoB 194 2.67e+00 1ndoB d.17.4.4 38121 1d5yA 292 3.79e+00 1d5yA a.4.1.8 16055 a.4.1.8 16056 d.60.1.2 39532 1a49A 530 4.12e+00 1a49A b.58.1.1 27026 c.1.12.1 29255 c.49.1.1 33109 1l9mA 692 4.15e+00 1cne 270 4.78e+00 1ndh b.43.4.2 25661 c.25.1.1 31551 1ewjA 126 4.91e+00 1ecsA d.32.1.2 59526 1eg9B 194 5.50e+00 1ndoB d.17.4.4 38120 1pfo 500 7.33e+00 1pfo f.9.1.1 43826 1ccwA 137 7.47e+00 1be1 c.23.6.1 31238 1b8zA 90 7.51e+00 1huuA a.55.1.1 17902 1b1a 137 8.10e+00 1be1 c.23.6.1 31242 1gm5A 780 9.10e+00 a.29.4.1 65298 b.40.4.9 65299 c.37.1.13 65300 c.37.1.13 65301 1ecsA 126 1.01e+01 1ecsA d.32.1.2 59407 1al3 324 1.04e+01 1al3 c.94.1.1 35835 1jb3A 131 1.08e+01 1jc7A b.40.3.2 62833 1jc7A 131 1.12e+01 1jc7A b.40.3.2 62873 1fnc 314 1.21e+01 1fnc b.43.4.2 25627 c.25.1.1 31517 1fnd 314 1.21e+01 1fnc b.43.4.2 25626 c.25.1.1 31516 1ytfD 121 1.35e+01 1ytfD a.32.1.1 16998 b.56.1.1 27011 1i36A 264 1.40e+01 1b33N 67 1.46e+01 1b33N d.30.1.1 38459 1ds6B 180 1.61e+01 1rhoA b.1.1.5 21898 1huuA 90 1.63e+01 1huuA a.55.1.1 17897 5cpp 414 1.67e+01 1phd a.104.1.1 18935 1ir6A 424 1.80e+01 1fs7A 485 1.80e+01 1qdbA a.138.1.3 19691 1bg6 359 1.92e+01 1bg6 a.100.1.5 18810 c.2.1.6 30214 1qdbA 473 1.98e+01 1qdbA a.138.1.3 19688 1h8eG 272 1.99e+01 1e79G c.49.2.1 60756 2hvm 273 2.04e+01 1cnv c.1.8.5 28985 1e79A 510 2.09e+01 1skyB a.69.1.1 18269 b.49.1.1 26434 c.37.1.11 32314 1a78A 134 2.14e+01 1c1lA b.29.1.3 24212 2dynA 122 2.17e+01 1dynA b.55.1.1 26957 1ijaA 148 2.27e+01 1ijaA b.100.1.1 62484 1dynA 125 2.29e+01 1dynA b.55.1.1 26955 1bmfA 510 2.40e+01 1skyB a.69.1.1 18281 b.49.1.1 26446 c.37.1.11 32326 1ft9A 222 2.47e+01 1ft9A a.4.5.4 16107 b.82.3.1 28131 1cqqA 180 2.52e+01 1cqqA b.47.1.4 26422 2fcbA 173 2.52e+01 2fcbA b.1.1.4 21781 b.1.1.4 21782 1qmqA 414 2.55e+01 1phd a.104.1.1 18907 1ktjA 129 2.70e+01 1ep3B 262 2.78e+01 1ep2B b.43.4.2 25664 c.25.1.3 31554 1bovA 69 2.79e+01 2bosA b.40.2.1 25070 3rp2A 224 2.84e+01 1a7s b.47.1.2 26298 1c0nA 406 2.89e+01 1c0nA c.67.1.3 34433 1c4qA 69 2.93e+01 2bosA b.40.2.1 25010 1f46A 140 2.95e+01 1f46A d.129.4.1 59643 1e1oA 504 2.96e+01 1lylA b.40.4.1 25258 d.104.1.1 40714 1phd 414 2.98e+01 1phd a.104.1.1 18913 1phg 414 2.99e+01 1phd a.104.1.1 18910 1jf9A 408 2.99e+01 1c0nA c.67.1.3 62931 1k7cA 233 3.10e+01 c.23.10.4 68267 1sltA 134 3.10e+01 1c1lA b.29.1.3 24186 1lylA 504 3.15e+01 1lylA b.40.4.1 25261 d.104.1.1 40717 1cjwA 166 3.17e+01 1cjwA d.108.1.1 40818 1hf2A 210 3.18e+01 1hf2A b.80.3.1 60992 c.102.1.1 60993 1h8eA 510 3.20e+01 1skyB a.69.1.1 60738 b.49.1.1 60739 c.37.1.11 60740 1dz4A 414 3.43e+01 1phd a.104.1.1 18903 1fdr 248 3.43e+01 1fdr b.43.4.2 25653 c.25.1.1 31543 1dwkA 156 3.50e+01 1dw9A a.35.1.4 17075 d.72.1.1 39606 1h75A 81 3.51e+01 1h75A c.47.1.1 60716 1qhxA 178 3.53e+01 1qhsA c.37.1.3 31936 1behA 187 3.56e+01 1a44 b.17.1.1 23700 1dw9A 156 3.62e+01 1dw9A a.35.1.4 17065 d.72.1.1 39596 1b8aA 438 3.62e+01 1b8aA b.40.4.1 25244 d.104.1.1 40765 1qhsA 178 3.63e+01 1qhsA c.37.1.3 31938 1deoA 233 3.63e+01 1deoA c.23.10.4 31345 1lj5A 379 3.65e+01 1sltB 134 3.66e+01 1c1lA b.29.1.3 24187 1fc6A 388 3.67e+01 1fc6A b.36.1.3 64738 c.14.1.2 64739 1slaA 134 3.84e+01 1c1lA b.29.1.3 24196 1a7s 221 3.91e+01 1a7s b.47.1.2 26284 1php 394 3.94e+01 16pk c.86.1.1 35452 1a44 185 3.98e+01 1a44 b.17.1.1 23704