PFRMAT SS
TARGET T0151
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str-seeded.net
METHOD This is a 4-layer network, with
METHOD window units
METHOD 5 15
METHOD 7 15
METHOD 9 15
METHOD 13 13 (1 str )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0151.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 4
METHOD
MODEL 1
L C 0.830
R C 0.556
Y H 0.291
A H 0.290
T H 0.293
A Z 0.330
K Z 0.355
V Z 0.377
N H 0.222
K Z 0.251
A C 0.243
S C 0.297
R C 0.349
S T 0.366
G S 0.353
G S 0.361
F C 0.435
G C 0.379
S C 0.436
G C 0.384
S C 0.390
R C 0.357
P C 0.419
A C 0.392
P C 0.332
A C 0.297
Q C 0.292
T C 0.328
S C 0.354
S C 0.441
A C 0.538
S C 0.351
G T 0.454
D C 0.395
D C 0.718
P T 0.501
W T 0.614
G T 0.344
S C 0.531
A C 0.492
P C 0.590
A C 0.403
S T 0.304
G C 0.349
S C 0.378
F C 0.310
G C 0.344
G C 0.442
G C 0.409
D C 0.486
D C 0.463
E C 0.525
P C 0.618
P C 0.891
F C 0.989
END