(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html
Citations (SAM, SAM-T99, HMMs)
- R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
- K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
- A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
Sequence numbers correspond to the following labels:
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- T0151 Single-strand binding protein (SSB), M. tuberculosis H37Rv
-
- gi|15607196|ref|NP_214568.1|_110:164 (NC_000962) ssb [Mycobacterium tuberculosis H37Rv]
- gi|15839431|ref|NP_334468.1| (NC_002755) single-strand binding protein [Mycobacterium tuberculosis CDC1551]
- gi|6647827sp|P71711|SSB_MYCTU Single-strand binding protein (SSB) (Helix-destabilizing protein)
- gi|7439930|pir||F70913 probable ssb protein - Mycobacterium tuberculosis (strain H37RV)
- gi|1568593|emb|CAB02532.1| (Z80775) ssb [Mycobacterium tuberculosis H37Rv]
- gi|13879103|gb|AAK44282.1| (AE006918) single-strand binding protein [Mycobacterium tuberculosis CDC1551]
-
- gi|15828449|ref|NP_302712.1|_110:168 (NC_002677) single strand binding protein [Mycobacterium leprae]
- gi|13432209sp|P46390|SSB_MYCLE Single-strand binding protein (SSB) (Helix-destabilizing protein)
- gi|2959411|emb|CAA17953.1| (AL022118) single-stranded binding protein [Mycobacterium leprae]
- gi|13093879|emb|CAC32216.1| (AL583926) single strand binding protein [Mycobacterium leprae]
-
- gi|21686516|gb|AAM74937.1|AF517942_1_110:171 (AF517942) single-stranded DNA-binding protein [Arthrobacter aurescens]
-
- gi|13561952|gb|AAK30583.1|_110:165 (AF349434) single-stranded DNA-binding protein [Mycobacterium smegmatis]
10 20 30 40 50
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1 LRYATAKVNKASRSG....GFGSGSRPAPAQ.TSSASGDDPW..GSAPASGSFGGGDD.EPPF
2 LRYATAKVNKASRSG....GFGSGSRPAPAQ.TSSASGDDPW..GSAPASGSFGGGDD.EPPF
3 LRYATAKVNKASRSGggggGFGSGSRQAPAQ.MSGGVGDDPW..GSAPTSGSFGVGDE.EPPF
4 LRYANAKVNRTQRNNnqgaGNGGGFGNQGAG.AQATQQDDPWaaNSSASAGSWGNGPDsEPPF
5 LRYATAKVNKASRSG....GGGGGFGSGGGGsRQSEPKDDPW..GSAPASGSFSGADD.EPPF