# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1qpsA	261	4.19e-01	1ckqA	c.52.1.1	33234
1pmlA	86	9.89e-01	5hpgA	g.14.1.1	44632
2cae	484	1.88e+00	1cf9A	e.5.1.1	42810
1tum	129	2.01e+00	1tum	d.113.1.1	40922
1cur	155	3.84e+00	1rcy	b.6.1.1	23021
1ehaA	558	4.63e+00	1ehaA	b.1.1.5	21859
				b.71.1.1	27786
				c.1.8.1	28773
1b78A	193	5.30e+00	1b78A	c.51.4.1	33221
1qc9A	276	5.44e+00	1ckqA	c.52.1.1	33235
2nadA	393	6.38e+00	2nadA	c.2.1.4	30090
				c.23.12.1	31350
1eriA	276	6.99e+00	1ckqA	c.52.1.1	33231
1rcy	151	7.84e+00	1rcy	b.6.1.1	23018
1ckqA	276	8.24e+00	1ckqA	c.52.1.1	33229
1cl8A	276	8.31e+00	1ckqA	c.52.1.1	33230
1qbhA	101	8.37e+00	1g3fA	g.52.1.1	45374
1vaoA	560	8.39e+00	1qltA	d.58.32.1	39461
				d.145.1.1	41724
2nacA	393	8.75e+00	2nadA	c.2.1.4	30088
				c.23.12.1	31348
1a3z	155	9.32e+00	1rcy	b.6.1.1	23019
2mjpA	193	9.87e+00	1b78A	c.51.4.1	33223
1qltA	560	9.96e+00	1qltA	d.58.32.1	39457
				d.145.1.1	41720
1e8gA	560	1.10e+01	1qltA	d.58.32.1	39455
				d.145.1.1	41718
1ezvG	93	1.16e+01	1ezvG	f.2.1.8	59551
1e30A	155	1.43e+01	1rcy	b.6.1.1	23016
1kxrA	339	1.45e+01			
1bhtA	176	1.48e+01	1bhtA	g.10.1.1	44603
				g.14.1.1	44663
1mknA	59	1.81e+01	1mknA	g.5.1.1	44383
1korA	400	1.91e+01			
1mut	129	1.91e+01	1tum	d.113.1.1	40921
1aroP	883	1.92e+01	1cezA	e.8.1.3	43112
1mkaA	171	1.99e+01	1mkaA	d.38.1.2	38543
1lml	478	2.12e+01	1lml	d.92.1.3	40295
1gkxA	388	2.58e+01		a.29.5.1	65266
				d.122.1.4	65267
1f37A	110	2.67e+01	1f37A	c.47.1.11	33088
1jj2K	164	2.70e+01	1ffkJ	c.12.1.1	63096
4rnpA	883	2.84e+01	1cezA	e.8.1.3	43113
1cf9A	753	3.28e+01	1cf9A	c.23.16.3	31441
				e.5.1.1	42815
1jj2Z	56	3.31e+01	1ffkX	g.41.8.2	63111
1ab3	88	3.33e+01	1a32	a.16.1.2	16395
1e5rA	290	3.36e+01	1e5rA	b.82.2.4	59276
1fsgA	233	3.46e+01	1qk3A	c.61.1.1	34029
1bzyA	217	3.51e+01	1qk3A	c.61.1.1	34071
1ystH	260	3.66e+01	6prcH	b.41.1.1	25482
				f.2.1.2	43511
1ffkJ	164	3.71e+01	1ffkJ	c.12.1.1	30880