# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1pmlA 86 9.61e-01 5hpgA g.14.1.1 44632 1rcy 151 1.86e+00 1rcy b.6.1.1 23018 1a3z 155 1.88e+00 1rcy b.6.1.1 23019 1cur 155 1.98e+00 1rcy b.6.1.1 23021 2cae 484 2.02e+00 1cf9A e.5.1.1 42810 1e30A 155 3.24e+00 1rcy b.6.1.1 23016 1qbhA 101 5.29e+00 1g3fA g.52.1.1 45374 1ehaA 558 5.50e+00 1ehaA b.1.1.5 21859 b.71.1.1 27786 c.1.8.1 28773 1mut 129 5.78e+00 1tum d.113.1.1 40921 1bhtA 176 6.24e+00 1bhtA g.10.1.1 44603 g.14.1.1 44663 1rdr 461 6.78e+00 1rdr e.8.1.4 43116 1hcz 252 7.36e+00 1hcz b.2.6.1 22464 b.84.2.2 28250 1tum 129 7.86e+00 1tum d.113.1.1 40922 1ffkJ 164 8.51e+00 1ffkJ c.12.1.1 30880 1cf9A 753 9.42e+00 1cf9A c.23.16.3 31441 e.5.1.1 42815 1qpsA 261 9.56e+00 1ckqA c.52.1.1 33234 4rnpA 883 1.20e+01 1cezA e.8.1.3 43113 1al0B 120 1.22e+01 1cd3B 1bzyA 217 1.30e+01 1qk3A c.61.1.1 34071 1fsgA 233 1.31e+01 1qk3A c.61.1.1 34029 1qk3A 233 1.39e+01 1qk3A c.61.1.1 34031 1eduA 149 1.47e+01 1eduA a.118.9.1 19215 1kxrA 339 1.52e+01 1eyhA 144 1.54e+01 1eduA a.118.9.1 19214 1e15A 499 1.65e+01 1e15A b.72.2.1 27810 c.1.8.5 29006 d.26.3.1 38440 1ihgA 370 1.81e+01 2cpl a.118.8.1 62380 b.62.1.1 62381 2sns 149 1.81e+01 1snc b.40.1.1 24860 1qk4A 233 1.97e+01 1qk3A c.61.1.1 34037 1pyiA 96 2.11e+01 1pyiA g.38.1.1 45079 h.1.3.1 45512 1qlnA 883 2.11e+01 1cezA e.8.1.3 43111 1cezA 883 2.13e+01 1cezA e.8.1.3 43110 1b0pA 1231 2.17e+01 c.36.1.4 31831 c.36.1.4 31832 c.48.1.3 33104 c.64.1.1 34157 d.58.1.5 39003 1kekA 1231 2.22e+01 c.36.1.4 68524 c.36.1.4 68525 c.48.1.3 68526 c.64.1.1 68527 d.58.1.5 68528 1k3iA 656 2.60e+01 b.1.1.5 68113 b.18.1.1 68114 b.69.1.1 68115 1gof 639 2.68e+01 1gof b.1.1.5 21807 b.18.1.1 23709 b.69.1.1 27631 1avpA 204 2.74e+01 1avpA d.3.1.7 37132 1b78A 193 2.76e+01 1b78A c.51.4.1 33221 1dfcA 493 2.76e+01 1dfcA b.42.5.1 25616 b.42.5.1 25617 b.42.5.1 25618 b.42.5.1 25619 1vaoA 560 2.90e+01 1qltA d.58.32.1 39461 d.145.1.1 41724 2nacA 393 2.91e+01 2nadA c.2.1.4 30088 c.23.12.1 31348 1gbs 185 2.92e+01 153l d.2.1.5 36986 1kbpA 432 2.95e+01 4kbpA b.1.12.1 22349 d.159.1.1 42068 1aroP 883 2.95e+01 1cezA e.8.1.3 43112 1ffkX 56 3.07e+01 1ffkX g.41.8.2 45316 1axiB 236 3.15e+01 1axiB b.1.2.1 21997 b.1.2.1 21998 1ewsA 32 3.26e+01 1ewsA g.9.1.1 59534 2mjpA 193 3.50e+01 1b78A c.51.4.1 33223 1goh 639 3.60e+01 1gof b.1.1.5 21809 b.18.1.1 23711 b.69.1.1 27633 1cv8 174 3.71e+01 1cv8 d.3.1.1 37089 1he7A 126 3.76e+01 1wwcA b.1.1.4 60970 1g2oA 268 3.79e+01 1b8oA c.56.2.1 60228 1gkzA 388 3.82e+01 a.29.5.1 65268 d.122.1.4 65269 1cnuA 137 3.91e+01 1cof d.109.1.2 40862 1e8gA 560 3.97e+01 1qltA d.58.32.1 39455 d.145.1.1 41718 1dat 174 3.98e+01 2fha a.25.1.1 16677