PFRMAT SS TARGET T0151 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0151.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 132 METHOD MODEL 1 M C 0.457 A T 0.448 G T 0.421 D T 0.405 T E 0.349 T E 0.629 I E 0.947 T E 0.988 I E 0.992 V E 0.984 G E 0.948 N E 0.881 L E 0.743 T E 0.520 A T 0.363 D T 0.531 P T 0.574 E E 0.339 L E 0.708 R E 0.721 F E 0.821 T E 0.462 P T 0.896 S T 0.969 G T 0.937 A C 0.435 A E 0.861 V E 0.960 A E 0.986 N E 0.991 F E 0.991 T E 0.990 V E 0.977 A E 0.951 S E 0.840 T E 0.461 P T 0.477 R T 0.434 I T 0.398 Y C 0.329 D T 0.607 R T 0.710 Q T 0.739 T T 0.721 G C 0.438 E E 0.296 W E 0.388 K E 0.294 D C 0.384 G C 0.395 E C 0.399 A C 0.371 L E 0.514 F E 0.727 L E 0.852 R E 0.896 C E 0.890 N E 0.844 I E 0.667 W C 0.298 R T 0.339 E H 0.533 A H 0.786 A H 0.908 E H 0.927 N H 0.921 V H 0.904 A H 0.877 E H 0.849 S H 0.770 L H 0.537 T T 0.632 R T 0.723 G T 0.804 A T 0.563 R E 0.789 V E 0.947 I E 0.982 V E 0.982 S E 0.960 G E 0.899 R E 0.891 L E 0.827 K E 0.819 Q E 0.760 R E 0.587 S E 0.668 F E 0.801 E E 0.832 T T 0.574 R T 0.914 E T 0.957 G T 0.907 E C 0.468 K E 0.908 R E 0.935 T E 0.936 V E 0.927 I E 0.956 E E 0.990 V E 0.991 E E 0.983 V E 0.975 D E 0.886 E E 0.804 I E 0.540 G C 0.536 P C 0.763 S C 0.978 END