;  SAM: /projects/compbio/bin/i686/prettyalign v3.3.2 (February, 2001) compiled 06/24/02_10:51:09
;  (c) 1992-2001 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
;  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
; Sequences correspond to the following labels:
; 1 T0150
; 2 1ck9A
; 3 1ffkE
; 4 1jj2F
                      10        20        30        40         50      
                      |         |         |         |          |      
   1 g.......-SVDFAFELRKAQDTGKIVMGARKSIQYAKMGGAKLIIVARNARP.DIKEDIEYYAR
   2 apvksq..--ESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPV.LRKSELEYYAM
   3 xvy12adl-EDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPeEIVMHIPELAD
   4 pvy12adl-EDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPeEIVMHIPELAD


        60        70        80        90       100           
        |         |         |         |         |           
   1 LSGIPVYEFEGTSVELGTLLGRPHTVSALAVVDPGESRILALGGK-e........
   2 LSKTKVYYFQGGNNELGTAVGKLFRVGVVSILEAGDSDILTTL---a........
   3 EKGVP-FIFVEQQDDLGHAAGLEVGSAAAAVTDAGA----------aat16elr.
   4 EKGVP-FIFVEQQDDLGHAAGLEVGSAAAAVTDAGAAATV------lee12elr.