PFRMAT SS
TARGET T0149
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0149.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 106
METHOD
MODEL 1
M E 0.190
N B 0.296
P A 0.240
I B 0.534
A E 0.618
V E 0.601
T E 0.733
L E 0.538
L A 0.385
T S 0.380
G D 0.295
F C 0.244
L G 0.270
G S 0.563
A H 0.304
G H 0.352
K H 0.773
T H 0.893
T H 0.944
L H 0.948
L H 0.933
R H 0.934
H H 0.908
I H 0.782
L H 0.662
N H 0.493
E S 0.242
Q T 0.139
H F 0.245
G S 0.696
Y B 0.342
K E 0.573
I E 0.584
A E 0.741
V E 0.689
I E 0.509
E E 0.319
N B 0.190
E E 0.159
F B 0.144
G D 0.320
E E 0.185
V B 0.175
S E 0.189
V H 0.329
D H 0.237
D H 0.509
Q H 0.767
L H 0.754
I H 0.612
G H 0.486
D H 0.332
R B 0.243
A S 0.470
T B 0.443
Q E 0.373
I A 0.379
K E 0.405
T E 0.482
L A 0.246
T H 0.172
N B 0.195
G S 0.330
C B 0.230
I B 0.252
C E 0.285
C E 0.177
S B 0.295
R H 0.311
S H 0.490
N H 0.684
E H 0.796
L H 0.829
E H 0.935
D H 0.953
A H 0.948
L H 0.934
L H 0.948
D H 0.955
L H 0.903
L H 0.843
D H 0.859
N H 0.797
L H 0.628
D H 0.605
K H 0.393
G S 0.222
N S 0.215
I I 0.164
Q E 0.227
F A 0.418
D G 0.757
R E 0.697
L E 0.796
V E 0.716
I E 0.421
E E 0.268
C E 0.235
T S 0.159
G D 0.319
M H 0.185
A S 0.157
D E 0.282
P H 0.320
G H 0.630
P H 0.808
I H 0.846
I H 0.803
Q H 0.835
T H 0.748
F H 0.502
F H 0.580
S H 0.296
H E 0.272
E H 0.436
V H 0.473
L S 0.219
C H 0.224
Q H 0.361
R H 0.225
Y E 0.295
L E 0.331
L E 0.198
D H 0.186
G B 0.351
V E 0.611
I E 0.621
A E 0.689
L A 0.545
V B 0.306
D E 0.453
A I 0.449
V H 0.505
H H 0.359
A H 0.427
D H 0.355
E H 0.284
Q S 0.353
M B 0.197
N H 0.235
Q H 0.259
F H 0.581
T H 0.675
I H 0.585
A H 0.436
Q H 0.690
S H 0.722
Q H 0.503
V H 0.345
G H 0.551
Y S 0.504
A E 0.431
D G 0.566
R E 0.720
I E 0.832
L E 0.598
L E 0.269
T E 0.262
K H 0.192
T B 0.207
D E 0.201
V S 0.342
A B 0.264
G B 0.414
E H 0.412
A H 0.564
E H 0.658
K H 0.824
L H 0.901
H H 0.926
E H 0.939
R H 0.917
L H 0.795
A H 0.734
R H 0.561
I C 0.270
N A 0.249
A H 0.423
R S 0.505
A B 0.337
P E 0.533
V A 0.462
Y E 0.487
T E 0.376
V B 0.248
T B 0.165
H I 0.221
G S 0.225
D S 0.408
I B 0.455
D B 0.546
L I 0.576
G H 0.634
L H 0.543
L H 0.481
F H 0.364
N S 0.252
T B 0.199
N S 0.236
G H 0.192
F E 0.194
M E 0.250
L H 0.244
E H 0.215
E H 0.216
N H 0.204
V H 0.228
V H 0.184
S H 0.265
T H 0.332
K H 0.239
P H 0.205
R H 0.220
F H 0.239
H S 0.191
F E 0.208
I H 0.298
A H 0.290
D H 0.252
K H 0.271
Q S 0.173
N H 0.159
D S 0.280
I E 0.354
S G 0.171
S E 0.407
I E 0.548
V E 0.541
V E 0.512
E E 0.349
L E 0.350
D I 0.167
Y C 0.236
P E 0.258
V B 0.417
D E 0.403
I H 0.563
S H 0.894
E H 0.896
V H 0.918
S H 0.911
R H 0.933
V H 0.903
M H 0.842
E H 0.869
N H 0.730
L H 0.738
L H 0.657
L H 0.667
E H 0.360
S H 0.151
A S 0.226
D H 0.233
K S 0.295
L E 0.349
L E 0.444
R E 0.429
Y E 0.443
K E 0.188
G B 0.324
M E 0.462
L E 0.487
W E 0.399
I B 0.208
D H 0.205
G S 0.312
E B 0.236
P E 0.161
N E 0.259
R E 0.388
L E 0.465
L E 0.461
F E 0.397
Q E 0.255
G E 0.267
V A 0.167
Q B 0.195
R H 0.148
L E 0.204
Y E 0.311
S E 0.293
A B 0.218
D B 0.247
W B 0.179
D H 0.185
R B 0.167
P H 0.227
W B 0.160
G B 0.230
D H 0.277
E S 0.352
K B 0.166
P E 0.233
H E 0.234
S E 0.235
T E 0.463
M E 0.668
V E 0.778
F E 0.525
I E 0.300
G B 0.368
I G 0.207
Q E 0.257
L B 0.387
P B 0.285
E H 0.658
E H 0.916
E H 0.905
I H 0.933
R H 0.908
A H 0.927
A H 0.774
F H 0.728
A H 0.767
G H 0.597
L H 0.406
R H 0.397
K H 0.346
END