Best Alignments for T0148

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here. If there are several alignments to templates that share a SCOP superfamily or FSSP representative, SAM_T02 only reports the best one.

Warning: E-values of the top models may be overly optimistic.

A2M alignment AL alignment E-value FSSP rep SCOP Domain(s)
T0148-1efcA-2track-protein-STR-local-adpstyle5.pw.a2m.gz T0148-1efcA-2track-protein-STR-local-adpstyle5.pw.al 5.4625e-01 1efcA c.37.1.8
T0148-1id0A-2track-protein-STR-local-adpstyle5.pw.a2m.gz T0148-1id0A-2track-protein-STR-local-adpstyle5.pw.al 8.3309e-01 d.122.1.3
T0148-1dd3A-2track-protein-STR-local-adpstyle5.pw.a2m.gz T0148-1dd3A-2track-protein-STR-local-adpstyle5.pw.al 1.5547e+00 1dd3C a.108.1.1
T0148-1ctf-2track-protein-STR-local-adpstyle5.pw.a2m.gz T0148-1ctf-2track-protein-STR-local-adpstyle5.pw.al 4.2259e+00 1ctf d.45.1.1
T0148-1kvoA-2track-protein-STR-local-adpstyle5.pw.a2m.gz T0148-1kvoA-2track-protein-STR-local-adpstyle5.pw.al 5.6855e+00 1poa a.133.1.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001