PFRMAT SS
TARGET T0148
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0148.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 17
METHOD
MODEL 1
M C 0.748
P C 0.761
S C 0.561
F C 0.451
D E 0.440
I E 0.485
V E 0.593
S E 0.600
E E 0.484
I C 0.526
T C 0.734
L H 0.836
H H 0.936
E H 0.950
V H 0.966
R H 0.971
N H 0.970
A H 0.960
V H 0.966
E H 0.945
N H 0.922
A H 0.914
N H 0.802
R H 0.710
V H 0.518
L H 0.413
S C 0.407
T C 0.392
R E 0.334
Y E 0.478
D E 0.357
F T 0.584
R T 0.746
G T 0.768
V T 0.362
E E 0.664
A E 0.892
V E 0.934
I E 0.956
E E 0.975
L E 0.964
N E 0.729
E T 0.906
K T 0.947
N T 0.919
E E 0.627
T E 0.945
I E 0.986
K E 0.979
I E 0.955
T E 0.819
T E 0.411
E T 0.578
S T 0.639
D H 0.462
F H 0.668
Q H 0.723
L H 0.848
E H 0.871
Q H 0.896
L H 0.946
I H 0.978
E H 0.980
I H 0.985
L H 0.972
I H 0.984
G H 0.983
S H 0.981
C H 0.968
I H 0.958
K H 0.930
R H 0.837
G C 0.919
I C 0.860
E C 0.848
H G 0.692
S G 0.808
S G 0.812
L G 0.369
D C 0.407
I C 0.345
P T 0.407
A T 0.387
E T 0.305
S C 0.310
E T 0.341
H T 0.422
H T 0.495
G T 0.612
K T 0.464
L E 0.595
Y E 0.841
S E 0.930
K E 0.963
E E 0.979
I E 0.978
K E 0.962
L E 0.859
K E 0.523
Q T 0.341
G C 0.464
I C 0.456
E C 0.480
T H 0.922
E H 0.964
M H 0.987
A H 0.997
K H 0.998
K H 0.997
I H 0.999
T H 0.999
K H 0.998
L H 0.997
V H 0.994
K H 0.985
D H 0.950
S H 0.890
K C 0.756
I C 0.774
K C 0.557
V E 0.649
Q E 0.855
T E 0.883
Q E 0.860
I E 0.687
Q T 0.438
G T 0.672
E T 0.369
Q E 0.718
V E 0.842
R E 0.831
V E 0.784
T C 0.392
G T 0.577
K T 0.555
S C 0.400
R H 0.948
D H 0.981
D H 0.992
L H 0.999
Q H 1.000
A H 0.999
V H 1.000
I H 0.999
Q H 0.998
L H 0.995
V H 0.984
K H 0.937
S H 0.625
A C 0.421
E T 0.470
L T 0.559
G C 0.464
Q C 0.484
P C 0.593
F C 0.399
Q E 0.484
F E 0.609
N E 0.549
N C 0.390
F C 0.587
R C 0.775
D C 0.971
END