PFRMAT SS
TARGET T0148
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0148.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 17
METHOD
MODEL 1
M E 0.199
P E 0.289
S E 0.336
F E 0.304
D E 0.301
I H 0.338
V H 0.325
S H 0.309
E H 0.260
I B 0.272
T H 0.259
L H 0.702
H H 0.886
E H 0.921
V H 0.944
R H 0.928
N H 0.931
A H 0.925
V H 0.928
E H 0.931
N H 0.905
A H 0.888
N H 0.840
R H 0.828
V H 0.723
L H 0.510
S H 0.377
T H 0.185
R E 0.201
Y E 0.263
D A 0.258
F S 0.223
R G 0.323
G S 0.597
V E 0.393
E A 0.349
A E 0.499
V E 0.550
I E 0.495
E E 0.468
L E 0.387
N C 0.294
E H 0.359
K B 0.231
N S 0.356
E E 0.415
T E 0.546
I E 0.645
K E 0.640
I E 0.503
T A 0.294
T C 0.404
E H 0.358
S H 0.204
D H 0.433
F H 0.427
Q H 0.452
L H 0.855
E H 0.915
Q H 0.890
L H 0.921
I H 0.942
E H 0.936
I H 0.971
L H 0.932
I H 0.889
G H 0.944
S H 0.869
C H 0.892
I H 0.825
K H 0.808
R B 0.726
G T 0.381
I B 0.386
E E 0.315
H I 0.348
S H 0.452
S S 0.273
L E 0.385
D E 0.236
I B 0.210
P H 0.291
A H 0.213
E E 0.282
S E 0.281
E B 0.237
H H 0.152
H D 0.208
G D 0.245
K B 0.174
L E 0.359
Y E 0.470
S E 0.466
K E 0.537
E A 0.513
I E 0.538
K E 0.494
L A 0.307
K H 0.333
Q H 0.222
G H 0.240
I H 0.364
E H 0.410
T H 0.793
E H 0.830
M H 0.807
A H 0.892
K H 0.897
K H 0.915
I H 0.903
T H 0.865
K H 0.828
L H 0.819
V H 0.582
K H 0.527
D H 0.381
S H 0.229
K H 0.222
I E 0.343
K E 0.416
V A 0.436
Q E 0.255
T E 0.416
Q E 0.377
I A 0.307
Q D 0.242
G S 0.222
E B 0.179
Q E 0.448
V E 0.573
R E 0.569
V A 0.347
T G 0.306
G S 0.573
K C 0.464
S B 0.516
R H 0.563
D H 0.702
D H 0.752
L H 0.901
Q H 0.956
A H 0.967
V H 0.960
I H 0.931
Q H 0.938
L H 0.921
V H 0.507
K B 0.402
S H 0.402
A H 0.450
E S 0.307
L B 0.310
G S 0.439
Q B 0.471
P E 0.377
F E 0.512
Q E 0.514
F E 0.411
N E 0.197
N E 0.365
F E 0.206
R B 0.225
D E 0.283
END