# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1id0A 152 9.82e-02 d.122.1.3 66111 1efcA 393 1.69e-01 1efcA b.43.3.1 25680 b.44.1.1 25720 c.37.1.8 32113 1d2eA 397 2.16e-01 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1hf2A 210 5.78e-01 1hf2A b.80.3.1 60992 c.102.1.1 60993 1etu 394 6.29e-01 1efcA c.37.1.8 64737 1dd3A 128 1.13e+00 1dd3C a.108.1.1 19031 d.45.1.1 38760 1aipE 405 1.36e+00 1efcA b.43.3.1 25699 b.44.1.1 25739 c.37.1.8 32134 1qd1A 325 2.08e+00 1qd1A d.58.34.1 39493 d.58.34.1 39494 1exmA 405 2.26e+00 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 1ctf 74 2.94e+00 1ctf d.45.1.1 38759 1kvoA 124 2.94e+00 1poa a.133.1.2 19564 1ihjA 98 3.11e+00 1pdr b.36.1.1 62382 1ha3A 405 3.22e+00 1efcA b.43.3.1 60869 b.44.1.1 60870 c.37.1.8 60871 2oatA 439 3.28e+00 2dkb c.67.1.4 34452 3ladA 476 3.38e+00 1lvl c.3.1.5 30573 c.3.1.5 30574 d.87.1.1 40208 1tadA 324 4.09e+00 1cipA a.66.1.1 18194 c.37.1.8 32077 1eudB 396 4.10e+00 2scuB c.23.4.1 31150 d.142.1.4 41571 1fecA 490 4.14e+00 3grs c.3.1.5 30489 c.3.1.5 30490 d.87.1.1 40176 1k75A 434 4.16e+00 c.82.1.2 68253 1kaeA 434 4.21e+00 1v39 322 4.38e+00 3mag c.66.1.9 34206 1vp9 322 4.38e+00 3mag c.66.1.9 34210 3mag 307 4.46e+00 3mag c.66.1.9 34205 1oatA 439 5.05e+00 2dkb c.67.1.4 34461 1smlA 269 5.38e+00 1smlA d.157.1.1 42053 1d2iA 223 6.26e+00 1d2iA c.52.1.5 33297 1pea 385 6.49e+00 1pea c.93.1.1 35662 1ff9A 450 6.81e+00 1ff9A c.2.1.3 30039 d.81.1.2 39954 1vpt 348 6.85e+00 3mag c.66.1.9 34207 1rypJ 204 7.13e+00 d.153.1.4 41878 1dfmA 223 7.43e+00 1d2iA c.52.1.5 33295 1pytA 94 8.27e+00 1pytA d.58.3.1 39064 1faoA 126 8.30e+00 1faoA b.55.1.1 26974 1g61A 228 8.43e+00 1g61A d.126.1.1 41126 3tmkA 216 8.84e+00 3tmkA c.37.1.1 31920 1bak 119 9.21e+00 1bak b.55.1.1 26973 1fx2A 235 9.55e+00 1fx2A d.58.29.1 39430 1ejdA 419 9.57e+00 1uae d.68.2.2 39576 1jy8A 159 9.59e+00 d.79.5.1 67452 1cipA 353 1.07e+01 1cipA a.66.1.1 18210 c.37.1.8 32093 1tag 324 1.08e+01 1cipA a.66.1.1 18197 c.37.1.8 32080 1iatA 557 1.13e+01 1dqrA c.80.1.2 62123 1psdA 409 1.18e+01 1psdA c.2.1.4 30097 c.23.12.1 31357 d.58.18.1 39354 2tmkA 216 1.18e+01 3tmkA c.37.1.1 31928 3aig 202 1.23e+01 1atlA d.92.1.9 40321 1kyqA 274 1.24e+01 1e5dA 402 1.25e+01 1e5dA c.23.5.1 31208 d.157.1.3 42061 1im5A 180 1.25e+01 c.33.1.2 66211 1kvkA 395 1.28e+01 1qqgA 264 1.29e+01 1qqgA b.55.1.2 26987 b.55.1.2 26988 1ffk1 177 1.29e+01 1ffk1 1ecpA 238 1.33e+01 1ecpA c.56.2.1 33775 1dc1A 323 1.37e+01 1dc1A c.52.1.11 33321 1k9sA 237 1.41e+01 c.56.2.1 68359 1f08A 148 1.46e+01 1f08A d.89.1.2 59564 1efm 393 1.47e+01 1efcA c.37.1.8 64732 1dqrA 557 1.51e+01 1dqrA c.80.1.2 35305 1pru 56 1.57e+01 1pru a.35.1.5 17104 1ktjA 129 1.61e+01 1b16A 254 1.65e+01 1b16A c.2.1.2 29875 1a6q 382 1.65e+01 1a6q d.158.1.1 42063 1kepA 348 1.69e+01 c.2.1.2 68536 1jdpA 441 1.70e+01 c.93.1.1 62906 1g7sA 594 1.74e+01 1g7rA b.43.3.1 25712 b.43.3.1 25713 c.20.1.1 31032 c.37.1.8 32147 3tgl 269 1.76e+01 3tgl c.69.1.17 34733 1gx1A 160 1.76e+01 1dtwB 342 1.81e+01 1qs0B c.36.1.3 31828 c.48.1.2 33102 1ih8A 271 1.84e+01 2nsyA c.26.2.1 62377 2nsyA 271 1.84e+01 2nsyA c.26.2.1 31612 1nsyA 271 1.85e+01 2nsyA c.26.2.1 31614 1kqpA 271 1.85e+01 1evlA 401 1.85e+01 1qf6A c.51.1.1 33202 d.104.1.1 40751 1hqz1 141 1.93e+01 1lgyA 269 1.93e+01 3tgl c.69.1.17 34758 1a9v 129 1.94e+01 1a9v b.1.1.5 21946 2if1 126 2.02e+01 2if1 d.64.1.1 39547 1gsa 316 2.02e+01 1gsa c.30.1.3 31718 d.142.1.1 41477 1dpgA 485 2.04e+01 1dpgA c.2.1.3 30074 d.81.1.5 39989 1k0rA 366 2.08e+01 b.40.4.5 67961 d.52.3.1 67962 d.52.3.1 67963 d.202.1.1 67964 1djxB 624 2.11e+01 1djxB a.39.1.7 17343 b.7.1.1 23160 c.1.18.1 29588 1jjtA 228 2.12e+01 1a7tA d.157.1.1 63139 1ah6 220 2.14e+01 1yer d.122.1.1 41094 1b8aA 438 2.14e+01 1b8aA b.40.4.1 25244 d.104.1.1 40765 1eazA 125 2.17e+01 1a4yA 460 2.17e+01 1a4yA c.10.1.1 30852 1dd6A 228 2.17e+01 1a7tA d.157.1.1 42054 1gx3A 284 2.19e+01 1jj2E 177 2.23e+01 1ffk1 d.141.1.1 63089 d.141.1.1 63090 1egr 85 2.24e+01 1kte c.47.1.1 32765 1dbqA 289 2.27e+01 1qpzA c.93.1.1 35666 1a3gA 308 2.29e+01 1daaA e.17.1.1 43286 1yna 194 2.32e+01 1axkA b.29.1.11 24335 2pth 193 2.33e+01 2pth c.56.3.1 33793 1cby 259 2.34e+01 1cby d.103.1.1 40705 1tib 269 2.35e+01 3tgl c.69.1.17 34738 1f4pA 147 2.39e+01 5nul c.23.5.1 59651 1i1kA 309 2.39e+01 1daaA e.17.1.1 61533 1crl 534 2.45e+01 1thg c.69.1.17 34765 1a4uA 254 2.47e+01 1b16A c.2.1.2 29878 1ej6B 1275 2.49e+01 i.7.1.1 45968 1fe0A 68 2.51e+01 1cc8A d.58.17.1 39345 1bu5A 147 2.51e+01 5nul c.23.5.1 31155 1fg7A 356 2.52e+01 1gewA c.67.1.1 59819 1qfnA 85 2.57e+01 1qfnA c.47.1.1 32768 1qf6A 642 2.61e+01 1qf6A c.51.1.1 33210 d.66.1.1 39551 d.67.1.1 39562 d.104.1.1 40759 1j98A 157 2.64e+01 1j98A d.185.1.2 62755 1dkxA 219 2.64e+01 1dkzA e.20.1.1 43315 1j9eA 147 2.72e+01 c.23.5.1 62756 1dkzA 219 2.74e+01 1dkzA e.20.1.1 43314 1fxmA 302 2.77e+01 1taxA c.1.8.3 60105 1qo7A 394 2.77e+01 1qo7A c.69.1.11 34697 1k6aA 303 2.78e+01 1hv8A 367 2.79e+01 1hv8A c.37.1.13 32405 c.37.1.13 32406 1c1yB 77 2.79e+01 1c1yB d.15.1.5 37618 1hh2P 344 2.83e+01 b.40.4.5 65835 d.52.3.1 65836 d.52.3.1 65837 d.202.1.1 65838 1g3qA 237 2.86e+01 1hyqA c.37.1.10 60237 1f60B 94 2.88e+01 1b64 d.58.12.1 39307 1djxA 624 2.89e+01 1djxB a.39.1.7 17342 b.7.1.1 23159 c.1.18.1 29587 1hufA 140 2.91e+01 1hufA d.195.1.1 61272 1fzrA 138 2.95e+01 1fzrA c.52.1.17 33336 2dpg 485 2.96e+01 1dpgA c.2.1.3 30076 d.81.1.5 39991 1chuA 540 3.02e+01 1chuA a.7.3.1 16325 c.3.1.4 30424 d.168.1.1 42307 1caj 260 3.08e+01 2cba b.74.1.1 27841 1bpoA 494 3.11e+01 1bpoA a.118.1.4 19143 b.69.6.1 27670 16pk 415 3.12e+01 16pk c.86.1.1 35454 1rypK 198 3.15e+01 d.153.1.4 41879 1f2tA 149 3.23e+01 1f2tA c.37.1.12 32373 2cba 260 3.24e+01 2cba b.74.1.1 27821 1fmaE 150 3.24e+01 1fmaE d.41.5.1 38630 1jsuC 84 3.26e+01 1jsuC j.55.1.1 46339 1gpjA 404 3.27e+01 a.151.1.1 65451 c.2.1.10 65452 d.58.39.1 65453 1akr 147 3.30e+01 1rcf c.23.5.1 31152 1qm4A 396 3.31e+01 1mxb d.130.1.1 41350 d.130.1.1 41351 d.130.1.1 41352 1dro 122 3.33e+01 1btn b.55.1.1 26954 1dp4A 435 3.37e+01 1dp4A c.93.1.1 35710 1ek8A 185 3.40e+01 1ek8A d.67.3.1 59444 1g6sA 427 3.41e+01 1eps d.68.2.2 39584 1ghhA 81 3.42e+01 1ghhA d.57.1.1 38940 1c8kA 842 3.54e+01 1a8i c.87.1.4 35491 1vaoA 560 3.57e+01 1qltA d.58.32.1 39461 d.145.1.1 41724 1maz 221 3.62e+01 1maz f.1.4.1 43393 1qltA 560 3.72e+01 1qltA d.58.32.1 39457 d.145.1.1 41720 1hr6B 443 3.73e+01 1be3A d.185.1.1 61166 d.185.1.1 61167 1g7tA 594 3.74e+01 1g7rA b.43.3.1 25714 b.43.3.1 25715 c.20.1.1 31033 c.37.1.8 32148 2fmr 65 3.78e+01 2fmr d.51.1.1 38808 1atlA 202 3.80e+01 1atlA d.92.1.9 40322 1a75A 108 3.85e+01 1a75A a.39.1.4 17216 1ggxA 223 3.86e+01 1ggxA d.22.1.1 38367 1e8gA 560 3.88e+01 1qltA d.58.32.1 39455 d.145.1.1 41718 1e2o 233 3.92e+01 1eaf c.43.1.1 32631 1e39A 571 3.95e+01 1qjdA a.138.1.3 19694 c.3.1.4 30431 d.168.1.1 42314