PFRMAT SS TARGET T0147_twice METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0147_twice.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 75 METHOD MODEL 1 M C 0.877 Y C 0.731 P C 0.703 V C 0.733 D C 0.582 L E 0.585 H E 0.713 M E 0.785 H E 0.737 T E 0.425 V C 0.355 A C 0.477 S T 0.627 T T 0.715 H T 0.716 A T 0.694 Y T 0.490 S T 0.397 T C 0.641 L H 0.959 S H 0.979 D H 0.988 Y H 0.992 I H 0.989 A H 0.984 Q H 0.987 A H 0.966 K H 0.951 Q H 0.933 K H 0.833 G C 0.846 I C 0.774 K E 0.818 L E 0.987 F E 0.993 A E 0.991 I E 0.942 T E 0.784 D C 0.464 H C 0.517 G T 0.470 P T 0.494 D T 0.430 M T 0.411 E T 0.328 D H 0.706 A H 0.748 P H 0.769 H H 0.876 H H 0.910 W H 0.910 H H 0.924 F H 0.916 I H 0.908 N H 0.930 M H 0.869 R H 0.843 I H 0.864 W H 0.860 P H 0.878 R H 0.860 V H 0.708 V H 0.464 D H 0.369 G C 0.610 V C 0.686 G C 0.601 I E 0.571 L E 0.515 R T 0.450 G T 0.563 I E 0.817 E E 0.940 A E 0.953 N E 0.933 I E 0.890 K E 0.778 N E 0.437 V T 0.685 D T 0.801 G T 0.653 E E 0.330 I E 0.553 D E 0.430 C C 0.354 S C 0.427 G T 0.395 K T 0.348 M H 0.423 F H 0.343 D T 0.447 S T 0.523 L T 0.513 D C 0.463 L E 0.849 I E 0.961 I E 0.978 A E 0.964 G E 0.901 F E 0.812 H E 0.693 E E 0.514 P E 0.401 V T 0.384 F T 0.586 A T 0.545 P T 0.594 H T 0.487 D C 0.366 K H 0.585 A H 0.704 T H 0.794 N H 0.856 T H 0.911 Q H 0.963 A H 0.971 M H 0.986 I H 0.985 A H 0.975 T H 0.951 I H 0.917 A H 0.846 S T 0.356 G C 0.488 N T 0.409 V E 0.583 H E 0.643 I E 0.869 I E 0.839 S E 0.672 H T 0.512 P T 0.728 G T 0.784 N T 0.834 P T 0.575 K T 0.529 Y T 0.371 E H 0.742 I H 0.815 D H 0.893 V H 0.950 K H 0.968 A H 0.974 V H 0.953 A H 0.985 E H 0.990 A H 0.992 A H 0.986 A H 0.974 K H 0.961 H H 0.561 Q C 0.856 V C 0.682 A E 0.794 L E 0.893 E E 0.907 I E 0.748 N C 0.404 N C 0.606 S C 0.460 S T 0.404 F H 0.385 L H 0.523 H H 0.566 S H 0.535 R H 0.596 K H 0.601 G H 0.536 S H 0.552 E H 0.640 D H 0.617 N H 0.560 C H 0.667 R H 0.923 E H 0.947 V H 0.964 A H 0.971 A H 0.977 A H 0.985 V H 0.977 R H 0.969 D H 0.931 A H 0.737 G C 0.916 G C 0.780 W E 0.657 V E 0.847 A E 0.857 L E 0.677 G T 0.465 S T 0.704 D T 0.777 S T 0.753 H T 0.460 T C 0.544 A T 0.341 F T 0.359 T T 0.336 M H 0.590 G H 0.492 E H 0.661 F H 0.811 E H 0.940 E H 0.952 C H 0.957 L H 0.969 K H 0.977 I H 0.979 L H 0.971 D H 0.950 A H 0.854 V C 0.404 D C 0.785 F C 0.755 P C 0.783 P H 0.759 E H 0.731 R H 0.757 I H 0.865 L H 0.847 N H 0.810 V H 0.713 S H 0.516 P H 0.350 R H 0.353 R H 0.417 L H 0.578 L H 0.612 N H 0.631 F H 0.700 L H 0.750 E H 0.778 S H 0.846 R H 0.862 G H 0.840 M H 0.818 A H 0.810 P H 0.770 I H 0.788 A H 0.728 E C 0.556 F C 0.538 A T 0.387 D T 0.409 L C 0.446 M C 0.337 Y C 0.444 P H 0.566 V H 0.664 D H 0.723 L H 0.806 H H 0.710 M H 0.643 H H 0.554 T T 0.333 V H 0.348 A T 0.332 S T 0.359 T T 0.368 H T 0.368 A T 0.349 Y C 0.350 S C 0.354 T C 0.481 L H 0.433 S H 0.591 D H 0.754 Y H 0.759 I H 0.728 A H 0.741 Q H 0.601 A C 0.443 K H 0.894 Q H 0.935 K H 0.937 G H 0.943 I H 0.947 K H 0.935 L H 0.881 F H 0.711 A C 0.434 I C 0.453 T T 0.465 D T 0.505 H T 0.477 G T 0.485 P T 0.444 D T 0.505 M T 0.581 E T 0.632 D T 0.603 A T 0.516 P C 0.404 H C 0.345 H E 0.379 W E 0.492 H E 0.605 F E 0.629 I E 0.570 N E 0.587 M E 0.557 R E 0.540 I E 0.421 W C 0.426 P T 0.404 R T 0.383 V T 0.355 V T 0.455 D C 0.486 G C 0.442 V T 0.441 G T 0.324 I T 0.255 L H 0.307 R H 0.357 G T 0.342 I C 0.338 E T 0.306 A T 0.285 N T 0.444 I T 0.506 K T 0.446 N T 0.462 V T 0.359 D C 0.335 G C 0.343 E C 0.467 I C 0.285 D T 0.310 C T 0.305 S T 0.336 G T 0.359 K T 0.480 M T 0.466 F T 0.474 D C 0.583 S H 0.383 L H 0.850 D H 0.854 L H 0.897 I H 0.934 I H 0.931 A H 0.833 G H 0.745 F T 0.415 H C 0.570 E C 0.525 P E 0.461 V E 0.645 F E 0.691 A E 0.557 P T 0.518 H T 0.754 D T 0.712 K T 0.565 A C 0.647 T C 0.822 N H 0.968 T H 0.984 Q H 0.992 A H 0.997 M H 0.998 I H 0.997 A H 0.997 T H 0.996 I H 0.991 A H 0.974 S H 0.877 G C 0.841 N C 0.745 V E 0.648 H E 0.931 I E 0.951 I E 0.919 S E 0.713 H T 0.402 P T 0.621 G T 0.695 N T 0.666 P T 0.475 K C 0.421 Y T 0.326 E C 0.350 I H 0.310 D H 0.447 V H 0.749 K H 0.874 A H 0.903 V H 0.939 A H 0.968 E H 0.975 A H 0.975 A H 0.966 A H 0.955 K H 0.882 H C 0.705 Q C 0.743 V C 0.568 A E 0.907 L E 0.978 E E 0.984 I E 0.939 N E 0.625 N C 0.549 S T 0.582 S T 0.567 F T 0.568 L T 0.602 H T 0.591 S T 0.691 R T 0.664 K T 0.485 G C 0.472 S C 0.546 E H 0.713 D H 0.792 N H 0.898 C H 0.965 R H 0.984 E H 0.986 V H 0.992 A H 0.995 A H 0.994 A H 0.993 V H 0.989 R H 0.977 D H 0.956 A H 0.793 G C 0.909 G C 0.816 W E 0.494 V E 0.600 A E 0.643 L C 0.413 G T 0.441 S T 0.632 D T 0.620 S T 0.608 H T 0.512 T T 0.503 A T 0.485 F T 0.482 T T 0.409 M H 0.256 G H 0.307 E H 0.404 F H 0.495 E T 0.306 E T 0.320 C T 0.325 L T 0.327 K C 0.384 I C 0.352 L T 0.380 D T 0.385 A T 0.421 V C 0.384 D C 0.697 F C 0.599 P C 0.605 P C 0.357 E G 0.324 R G 0.359 I T 0.488 L T 0.688 N T 0.616 V T 0.481 S C 0.685 P H 0.891 R H 0.924 R H 0.963 L H 0.993 L H 0.997 N H 0.996 F H 0.996 L H 0.993 E H 0.988 S H 0.959 R H 0.800 G C 0.932 M C 0.859 A C 0.666 P E 0.415 I C 0.381 A C 0.333 E T 0.267 F T 0.327 A C 0.374 D C 0.526 L C 0.801 END