PFRMAT SS TARGET T0147_twice AUTHOR 4069-6308-1312 METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 7 (1 EBGHSTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0147_twice.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 75 METHOD MODEL 1 M C 0.999 Y C 0.786 P C 0.467 V C 0.481 D E 0.595 L E 0.805 H E 0.845 M E 0.822 H E 0.668 T E 0.455 V E 0.362 A C 0.457 S C 0.724 T T 0.457 H T 0.423 A G 0.421 Y C 0.353 S S 0.450 T C 0.647 L H 0.983 S H 0.992 D H 0.995 Y H 0.998 I H 0.996 A H 0.993 Q H 0.994 A H 0.994 K H 0.987 Q H 0.905 K T 0.744 G T 0.897 I C 0.967 K S 0.451 L E 0.989 F E 0.998 A E 0.998 I E 0.957 T E 0.501 D C 0.516 H C 0.409 G S 0.315 P C 0.293 D C 0.279 M T 0.287 E C 0.403 D H 0.523 A H 0.761 P H 0.792 H H 0.899 H H 0.947 W H 0.949 H H 0.965 F H 0.960 I H 0.916 N H 0.881 M H 0.902 R H 0.911 I H 0.874 W H 0.821 P H 0.780 R H 0.706 V H 0.569 V H 0.302 D T 0.621 G T 0.723 V C 0.703 G E 0.483 I E 0.696 L E 0.549 R E 0.578 G E 0.824 I E 0.904 E E 0.938 A E 0.853 N E 0.880 I E 0.787 K E 0.690 N C 0.709 V T 0.462 D T 0.582 G S 0.349 E C 0.415 I E 0.508 D E 0.410 C C 0.409 S C 0.466 G H 0.347 K H 0.418 M H 0.460 F H 0.372 D T 0.299 S T 0.343 L C 0.643 D C 0.425 L E 0.951 I E 0.992 I E 0.993 A E 0.983 G E 0.842 F E 0.547 H C 0.402 E C 0.365 P C 0.254 V C 0.222 F C 0.291 A C 0.306 P T 0.320 H C 0.264 D C 0.407 K H 0.713 A H 0.825 T H 0.892 N H 0.928 T H 0.965 Q H 0.978 A H 0.978 M H 0.982 I H 0.981 A H 0.966 T H 0.943 I H 0.880 A H 0.656 S T 0.427 G S 0.363 N C 0.404 V C 0.502 H E 0.741 I E 0.960 I E 0.961 S E 0.853 H E 0.437 P C 0.458 G T 0.338 N S 0.370 P T 0.352 K C 0.500 Y C 0.963 E H 0.809 I H 0.845 D H 0.897 V H 0.970 K H 0.984 A H 0.989 V H 0.990 A H 0.991 E H 0.991 A H 0.987 A H 0.976 A H 0.926 K H 0.710 H T 0.642 Q C 0.425 V C 0.730 A E 0.722 L E 0.910 E E 0.929 I E 0.827 N E 0.483 N C 0.389 S S 0.434 S S 0.429 F H 0.370 L H 0.447 H H 0.505 S H 0.516 R H 0.515 K H 0.511 G H 0.428 S H 0.388 E H 0.519 D H 0.564 N H 0.597 C H 0.781 R H 0.959 E H 0.980 V H 0.991 A H 0.994 A H 0.992 A H 0.992 V H 0.990 R H 0.977 D H 0.925 A T 0.681 G T 0.934 G C 0.946 W E 0.477 V E 0.863 A E 0.900 L E 0.919 G E 0.672 S C 0.425 D C 0.399 S C 0.305 H C 0.299 T C 0.541 A G 0.244 F T 0.274 T H 0.245 M H 0.435 G H 0.452 E H 0.617 F H 0.772 E H 0.881 E H 0.910 C H 0.939 L H 0.953 K H 0.949 I H 0.952 L H 0.950 D H 0.941 A H 0.834 V T 0.534 D T 0.608 F C 0.769 P C 0.918 P H 0.738 E H 0.691 R H 0.643 I H 0.840 L H 0.761 N H 0.678 V H 0.616 S H 0.444 P C 0.349 R T 0.319 R H 0.305 L H 0.382 L H 0.481 N H 0.476 F H 0.678 L H 0.810 E H 0.816 S H 0.855 R H 0.832 G H 0.768 M H 0.715 A H 0.671 P H 0.705 I H 0.643 A H 0.415 E T 0.549 F C 0.574 A C 0.429 D T 0.284 L C 0.356 M C 0.522 Y C 0.462 P C 0.304 V C 0.510 D C 0.411 L E 0.486 H E 0.512 M E 0.463 H E 0.369 T C 0.300 V H 0.292 A H 0.348 S H 0.254 T C 0.274 H T 0.222 A E 0.247 Y S 0.214 S C 0.261 T T 0.260 L C 0.211 S C 0.377 D H 0.573 Y H 0.555 I H 0.548 A H 0.373 Q T 0.306 A S 0.428 K C 0.489 Q H 0.688 K H 0.750 G H 0.890 I H 0.879 K H 0.813 L H 0.751 F H 0.511 A C 0.316 I C 0.349 T H 0.315 D H 0.273 H C 0.337 G C 0.483 P C 0.321 D T 0.272 M T 0.228 E T 0.480 D T 0.402 A C 0.463 P C 0.669 H C 0.436 H E 0.438 W E 0.423 H E 0.511 F E 0.500 I E 0.487 N E 0.375 M E 0.437 R E 0.389 I E 0.355 W C 0.766 P T 0.473 R T 0.370 V C 0.310 V C 0.589 D C 0.456 G S 0.325 V C 0.318 G C 0.398 I C 0.328 L C 0.349 R T 0.241 G C 0.301 I C 0.478 E C 0.413 A E 0.365 N C 0.310 I S 0.281 K C 0.416 N C 0.290 V T 0.275 D T 0.259 G C 0.419 E C 0.523 I E 0.387 D E 0.341 C C 0.396 S C 0.329 G C 0.319 K C 0.341 M C 0.289 F C 0.397 D C 0.457 S H 0.317 L H 0.729 D H 0.692 L H 0.736 I H 0.787 I H 0.745 A H 0.590 G T 0.470 F T 0.606 H T 0.401 E C 0.627 P E 0.397 V C 0.458 F E 0.408 A C 0.439 P C 0.651 H C 0.330 D C 0.271 K C 0.444 A C 0.545 T C 0.772 N H 0.923 T H 0.975 Q H 0.986 A H 0.993 M H 0.993 I H 0.992 A H 0.993 T H 0.991 I H 0.979 A H 0.886 S T 0.662 G T 0.922 N C 0.743 V E 0.543 H E 0.898 I E 0.948 I E 0.935 S E 0.757 H C 0.617 P T 0.611 G T 0.648 N G 0.250 P C 0.341 K C 0.339 Y C 0.368 E C 0.319 I H 0.356 D H 0.469 V H 0.738 K H 0.849 A H 0.882 V H 0.921 A H 0.928 E H 0.945 A H 0.944 A H 0.923 A H 0.823 K T 0.530 H T 0.765 Q C 0.687 V C 0.421 A E 0.906 L E 0.973 E E 0.972 I E 0.836 N C 0.381 N C 0.526 S T 0.243 S T 0.428 F G 0.291 L C 0.274 H T 0.372 S T 0.375 R C 0.395 K C 0.418 G C 0.431 S C 0.577 E H 0.688 D H 0.740 N H 0.784 C H 0.941 R H 0.975 E H 0.986 V H 0.995 A H 0.998 A H 0.997 A H 0.996 V H 0.996 R H 0.988 D H 0.930 A T 0.690 G T 0.905 G C 0.836 W E 0.433 V E 0.624 A E 0.582 L E 0.527 G C 0.334 S C 0.489 D C 0.344 S T 0.322 H T 0.310 T C 0.475 A T 0.330 F T 0.311 T C 0.282 M H 0.375 G H 0.442 E H 0.504 F H 0.471 E H 0.432 E H 0.416 C H 0.355 L H 0.263 K C 0.270 I C 0.506 L C 0.691 D T 0.500 A T 0.530 V C 0.750 D C 0.723 F C 0.570 P C 0.571 P C 0.606 E C 0.297 R C 0.265 I G 0.360 L T 0.465 N T 0.355 V C 0.463 S C 0.852 P H 0.880 R H 0.958 R H 0.970 L H 0.993 L H 0.994 N H 0.993 F H 0.992 L H 0.990 E H 0.974 S H 0.908 R T 0.598 G T 0.863 M C 0.836 A C 0.796 P C 0.666 I C 0.514 A C 0.295 E C 0.369 F C 0.452 A C 0.412 D C 0.710 L C 0.998 END