PFRMAT SS TARGET T0147_twice METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 11 (1 ABCDEFGHIST ) METHOD The input amino acid frequencies were determined from METHOD alignment T0147_twice.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 75 METHOD MODEL 1 M A 0.223 Y B 0.373 P A 0.388 V E 0.371 D E 0.378 L E 0.299 H E 0.313 M E 0.288 H E 0.243 T E 0.285 V E 0.199 A B 0.202 S C 0.407 T H 0.303 H S 0.545 A S 0.279 Y E 0.176 S B 0.350 T B 0.581 L H 0.726 S H 0.933 D H 0.952 Y H 0.938 I H 0.947 A H 0.955 Q H 0.971 A H 0.917 K H 0.797 Q H 0.722 K C 0.564 G T 0.494 I E 0.466 K F 0.369 L E 0.500 F E 0.752 A E 0.697 I A 0.361 T B 0.271 D T 0.143 H I 0.235 G H 0.287 P H 0.347 D H 0.241 M B 0.202 E S 0.241 D H 0.431 A H 0.779 P H 0.769 H H 0.856 H H 0.900 W H 0.915 H H 0.850 F H 0.870 I H 0.914 N H 0.856 M H 0.889 R H 0.921 I H 0.883 W H 0.850 P H 0.802 R H 0.759 V H 0.501 V H 0.353 D H 0.191 G S 0.530 V E 0.436 G E 0.581 I E 0.414 L E 0.333 R G 0.146 G E 0.212 I E 0.536 E E 0.480 A E 0.429 N E 0.449 I E 0.330 K B 0.391 N B 0.257 V H 0.276 D B 0.259 G S 0.384 E B 0.294 I E 0.254 D E 0.199 C B 0.216 S H 0.262 G H 0.267 K H 0.377 M H 0.297 F I 0.335 D H 0.324 S S 0.425 L A 0.314 D G 0.404 L E 0.597 I E 0.597 I E 0.482 A E 0.447 G E 0.356 F E 0.263 H E 0.215 E B 0.192 P E 0.173 V H 0.171 F S 0.200 A B 0.175 P H 0.171 H H 0.272 D H 0.369 K H 0.605 A H 0.782 T H 0.840 N H 0.853 T H 0.879 Q H 0.939 A H 0.953 M H 0.934 I H 0.889 A H 0.882 T H 0.814 I H 0.657 A H 0.478 S B 0.277 G S 0.225 N S 0.182 V E 0.526 H E 0.440 I E 0.477 I E 0.453 S E 0.387 H B 0.258 P H 0.172 G S 0.335 N E 0.328 P I 0.347 K H 0.307 Y H 0.327 E H 0.717 I H 0.846 D H 0.777 V H 0.894 K H 0.945 A H 0.963 V H 0.945 A H 0.954 E H 0.970 A H 0.958 A H 0.916 A H 0.832 K H 0.676 H B 0.709 Q S 0.429 V B 0.410 A E 0.536 L E 0.551 E E 0.575 I E 0.405 N E 0.302 N S 0.205 S B 0.193 S H 0.275 F H 0.416 L H 0.497 H H 0.481 S H 0.514 R H 0.584 K H 0.509 G H 0.424 S H 0.474 E H 0.465 D H 0.484 N H 0.529 C H 0.671 R H 0.895 E H 0.953 V H 0.939 A H 0.948 A H 0.936 A H 0.926 V H 0.895 R H 0.748 D H 0.676 A B 0.731 G S 0.457 G B 0.479 W E 0.518 V E 0.546 A E 0.551 L E 0.414 G E 0.317 S S 0.186 D I 0.206 S H 0.371 H S 0.284 T B 0.211 A H 0.481 F H 0.448 T H 0.304 M H 0.314 G H 0.350 E H 0.423 F H 0.523 E H 0.662 E H 0.729 C H 0.789 L H 0.808 K H 0.873 I H 0.866 L H 0.802 D H 0.693 A H 0.483 V B 0.591 D S 0.392 F B 0.407 P B 0.689 P H 0.588 E H 0.834 R H 0.796 I H 0.821 L H 0.740 N H 0.706 V H 0.490 S H 0.391 P H 0.375 R H 0.466 R H 0.467 L H 0.516 L H 0.627 N H 0.590 F H 0.714 L H 0.745 E H 0.805 S H 0.807 R H 0.578 G H 0.513 M H 0.512 A H 0.665 P H 0.674 I H 0.613 A B 0.552 E S 0.458 F E 0.193 A E 0.261 D H 0.227 L E 0.221 M S 0.171 Y B 0.288 P E 0.260 V B 0.278 D E 0.261 L I 0.221 H E 0.157 M E 0.169 H E 0.178 T E 0.213 V E 0.176 A H 0.174 S E 0.203 T H 0.230 H H 0.162 A H 0.317 Y S 0.230 S H 0.195 T H 0.256 L H 0.540 S H 0.684 D H 0.772 Y H 0.764 I H 0.713 A H 0.713 Q H 0.468 A H 0.257 K H 0.573 Q H 0.607 K H 0.514 G H 0.483 I H 0.541 K H 0.467 L H 0.443 F H 0.198 A E 0.215 I H 0.287 T H 0.240 D H 0.274 H S 0.229 G C 0.215 P H 0.173 D S 0.153 M S 0.211 E H 0.270 D S 0.395 A B 0.286 P H 0.219 H E 0.214 H E 0.234 W E 0.235 H H 0.195 F E 0.290 I E 0.337 N E 0.300 M E 0.347 R E 0.273 I E 0.255 W E 0.389 P I 0.332 R B 0.247 V E 0.220 V C 0.312 D G 0.296 G S 0.451 V B 0.280 G H 0.164 I B 0.281 L H 0.174 R G 0.249 G S 0.413 I E 0.312 E E 0.198 A E 0.198 N S 0.245 I E 0.162 K H 0.232 N S 0.191 V H 0.136 D S 0.155 G E 0.230 E E 0.277 I E 0.204 D E 0.173 C E 0.219 S H 0.157 G S 0.164 K B 0.180 M H 0.193 F E 0.179 D S 0.271 S E 0.383 L H 0.580 D H 0.562 L H 0.576 I H 0.606 I H 0.401 A H 0.295 G H 0.204 F B 0.263 H S 0.664 E C 0.370 P E 0.273 V E 0.258 F E 0.303 A B 0.369 P B 0.364 H I 0.194 D S 0.191 K B 0.329 A B 0.355 T B 0.546 N H 0.721 T H 0.913 Q H 0.948 A H 0.965 M H 0.968 I H 0.978 A H 0.986 T H 0.970 I H 0.899 A H 0.864 S C 0.454 G T 0.326 N B 0.253 V E 0.549 H E 0.500 I E 0.556 I E 0.515 S E 0.367 H E 0.248 P H 0.237 G S 0.349 N E 0.217 P E 0.173 K H 0.196 Y S 0.249 E H 0.270 I H 0.304 D H 0.324 V H 0.584 K H 0.821 A H 0.857 V H 0.884 A H 0.892 E H 0.912 A H 0.897 A H 0.841 A H 0.651 K H 0.211 H S 0.278 Q S 0.286 V S 0.206 A E 0.489 L E 0.677 E E 0.605 I E 0.409 N A 0.310 N B 0.321 S I 0.380 S H 0.374 F S 0.301 L E 0.181 H H 0.283 S B 0.178 R S 0.211 K B 0.160 G B 0.216 S B 0.317 E H 0.413 D H 0.629 N H 0.605 C H 0.761 R H 0.890 E H 0.944 V H 0.930 A H 0.939 A H 0.956 A H 0.955 V H 0.934 R H 0.824 D H 0.809 A B 0.781 G S 0.601 G B 0.420 W E 0.451 V E 0.337 A E 0.348 L E 0.159 G S 0.220 S B 0.242 D I 0.200 S I 0.191 H S 0.242 T B 0.208 A H 0.203 F H 0.211 T H 0.211 M H 0.215 G H 0.194 E H 0.316 F H 0.440 E H 0.368 E H 0.430 C H 0.327 L H 0.254 K H 0.237 I B 0.295 L B 0.298 D H 0.513 A S 0.686 V B 0.347 D B 0.215 F B 0.316 P B 0.385 P B 0.258 E H 0.470 R S 0.354 I I 0.340 L H 0.510 N S 0.487 V B 0.330 S E 0.375 P H 0.588 R H 0.882 R H 0.866 L H 0.877 L H 0.890 N H 0.924 F H 0.903 L H 0.913 E H 0.829 S H 0.849 R B 0.756 G T 0.465 M B 0.428 A B 0.400 P B 0.204 I H 0.221 A H 0.276 E H 0.256 F S 0.198 A H 0.197 D S 0.346 L E 0.178 END