PFRMAT SS TARGET T0147 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0147.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 80 METHOD MODEL 1 M C 0.878 Y C 0.743 P C 0.685 V C 0.712 D C 0.548 L E 0.533 H E 0.680 M E 0.758 H E 0.702 T E 0.406 V C 0.410 A C 0.455 S T 0.522 T T 0.630 H T 0.671 A T 0.627 Y T 0.509 S T 0.411 T C 0.618 L H 0.977 S H 0.985 D H 0.991 Y H 0.993 I H 0.991 A H 0.986 Q H 0.986 A H 0.969 K H 0.955 Q H 0.937 K H 0.815 G C 0.856 I C 0.772 K E 0.817 L E 0.987 F E 0.993 A E 0.991 I E 0.946 T E 0.819 D C 0.414 H C 0.487 G T 0.482 P T 0.521 D T 0.482 M T 0.469 E T 0.409 D T 0.379 A H 0.387 P H 0.444 H H 0.634 H H 0.734 W H 0.738 H H 0.809 F H 0.849 I H 0.838 N H 0.896 M H 0.843 R H 0.859 I H 0.871 W H 0.839 P H 0.898 R H 0.867 V H 0.710 V H 0.406 D T 0.472 G C 0.512 V C 0.565 G C 0.423 I E 0.670 L E 0.591 R E 0.454 G T 0.611 I E 0.811 E E 0.943 A E 0.961 N E 0.950 I E 0.921 K E 0.817 N T 0.551 V T 0.841 D T 0.836 G T 0.463 E E 0.526 I E 0.719 D E 0.581 C E 0.403 S C 0.460 G T 0.341 K H 0.330 M H 0.346 F H 0.377 D T 0.450 S T 0.514 L T 0.571 D T 0.477 L E 0.573 I E 0.868 I E 0.954 A E 0.945 G E 0.916 F E 0.801 H E 0.670 E E 0.390 P T 0.339 V T 0.436 F T 0.598 A T 0.535 P T 0.539 H T 0.474 D C 0.357 K H 0.551 A H 0.656 T H 0.710 N H 0.869 T H 0.957 Q H 0.978 A H 0.976 M H 0.987 I H 0.987 A H 0.984 T H 0.980 I H 0.970 A H 0.958 S H 0.678 G T 0.532 N T 0.668 V T 0.602 H E 0.439 I E 0.814 I E 0.756 S E 0.531 H T 0.475 P T 0.610 G T 0.664 N T 0.577 P T 0.329 K H 0.303 Y H 0.373 E H 0.365 I H 0.307 D H 0.315 V H 0.336 K T 0.377 A T 0.291 V H 0.335 A H 0.530 E H 0.451 A H 0.940 A H 0.959 A H 0.963 K H 0.959 H H 0.966 Q H 0.952 V H 0.951 A H 0.927 L H 0.907 E H 0.884 I H 0.777 N C 0.707 N C 0.674 S C 0.429 S E 0.423 F E 0.529 L E 0.425 H T 0.349 S T 0.489 R T 0.545 K T 0.577 G T 0.542 S T 0.432 E T 0.364 D C 0.461 N C 0.504 C H 0.465 R H 0.956 E H 0.976 V H 0.983 A H 0.985 A H 0.982 A H 0.985 V H 0.980 R H 0.967 D H 0.934 A H 0.780 G C 0.921 G C 0.796 W E 0.726 V E 0.907 A E 0.912 L E 0.792 G E 0.347 S T 0.529 D T 0.707 S T 0.695 H T 0.657 T T 0.617 A G 0.415 F G 0.525 T G 0.485 M H 0.480 G H 0.500 E H 0.643 F H 0.933 E H 0.968 E H 0.986 C H 0.994 L H 0.996 K H 0.996 I H 0.996 L H 0.991 D H 0.976 A H 0.940 V H 0.764 D C 0.916 F C 0.883 P C 0.867 P H 0.413 E G 0.434 R G 0.449 I H 0.584 L H 0.546 N H 0.543 V H 0.407 S C 0.501 P H 0.530 R H 0.807 R H 0.870 L H 0.915 L H 0.925 N H 0.927 F H 0.947 L H 0.926 E H 0.919 S H 0.914 R H 0.778 G C 0.839 M C 0.693 A C 0.611 P C 0.467 I C 0.275 A G 0.361 E G 0.350 F C 0.351 A C 0.530 D C 0.708 L C 0.930 END