PFRMAT SS
TARGET T0147
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0147.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 80
METHOD
MODEL 1
M A 0.230
Y B 0.353
P A 0.389
V E 0.346
D E 0.399
L E 0.281
H E 0.296
M E 0.280
H E 0.254
T E 0.251
V E 0.224
A S 0.168
S C 0.281
T H 0.245
H S 0.442
A I 0.170
Y A 0.196
S B 0.347
T B 0.534
L H 0.776
S H 0.939
D H 0.952
Y H 0.945
I H 0.943
A H 0.956
Q H 0.970
A H 0.922
K H 0.806
Q H 0.731
K C 0.554
G T 0.493
I E 0.455
K F 0.341
L E 0.512
F E 0.754
A E 0.684
I A 0.372
T B 0.253
D E 0.162
H S 0.227
G H 0.230
P H 0.279
D S 0.209
M H 0.163
E H 0.195
D H 0.252
A H 0.458
P H 0.426
H H 0.580
H H 0.743
W H 0.764
H H 0.816
F H 0.850
I H 0.855
N H 0.836
M H 0.844
R H 0.849
I H 0.763
W H 0.705
P H 0.681
R H 0.673
V H 0.380
V H 0.239
D H 0.211
G S 0.576
V E 0.479
G E 0.607
I E 0.416
L E 0.360
R G 0.164
G B 0.188
I E 0.530
E E 0.479
A E 0.445
N E 0.473
I E 0.391
K B 0.364
N C 0.201
V H 0.251
D S 0.249
G B 0.203
E E 0.351
I E 0.346
D E 0.309
C B 0.221
S B 0.334
G I 0.271
K H 0.441
M S 0.262
F H 0.237
D H 0.271
S H 0.489
L H 0.332
D H 0.379
L H 0.355
I H 0.424
I A 0.403
A E 0.327
G E 0.407
F E 0.246
H E 0.182
E B 0.172
P H 0.222
V E 0.164
F B 0.178
A H 0.224
P S 0.232
H H 0.240
D H 0.334
K H 0.478
A H 0.634
T H 0.648
N H 0.742
T H 0.856
Q H 0.929
A H 0.948
M H 0.952
I H 0.938
A H 0.925
T H 0.849
I H 0.771
A H 0.464
S B 0.241
G H 0.176
N S 0.435
V E 0.377
H E 0.286
I E 0.353
I E 0.374
S E 0.247
H C 0.285
P H 0.233
G S 0.315
N B 0.210
P H 0.222
K H 0.258
Y H 0.205
E H 0.208
I H 0.196
D H 0.206
V H 0.250
K H 0.280
A H 0.317
V H 0.403
A H 0.670
E H 0.659
A H 0.870
A H 0.929
A H 0.940
K H 0.922
H H 0.861
Q H 0.861
V H 0.883
A H 0.876
L H 0.766
E H 0.682
I B 0.386
N S 0.405
N B 0.204
S E 0.278
S B 0.255
F E 0.289
L E 0.219
H E 0.250
S H 0.212
R B 0.214
K H 0.295
G S 0.234
S H 0.191
E B 0.159
D B 0.292
N B 0.329
C H 0.550
R H 0.863
E H 0.952
V H 0.927
A H 0.947
A H 0.953
A H 0.952
V H 0.931
R H 0.830
D H 0.809
A B 0.771
G T 0.552
G B 0.606
W E 0.613
V E 0.542
A E 0.498
L E 0.420
G E 0.210
S B 0.425
D I 0.402
S H 0.390
H S 0.383
T B 0.261
A H 0.409
F H 0.387
T S 0.310
M H 0.290
G H 0.481
E H 0.501
F H 0.787
E H 0.908
E H 0.938
C H 0.942
L H 0.952
K H 0.966
I H 0.961
L H 0.913
D H 0.807
A H 0.753
V B 0.661
D S 0.427
F B 0.362
P B 0.512
P I 0.259
E H 0.482
R H 0.385
I H 0.260
L H 0.332
N E 0.207
V S 0.320
S B 0.440
P H 0.338
R H 0.617
R H 0.820
L H 0.849
L H 0.901
N H 0.928
F H 0.934
L H 0.901
E H 0.792
S H 0.784
R B 0.588
G T 0.368
M B 0.377
A B 0.306
P B 0.309
I I 0.338
A H 0.475
E H 0.450
F S 0.321
A B 0.243
D H 0.194
L S 0.169
END