//GUESSED CONSTRAINTS FOR "LINKER REGION" NOT IN ROBETTA

// Constraints for parallel pairing of strands 6 & 7
// NOTE: ignores Robetta's prediction of a "6-6.5 hairpin"
// (I don't believe it)
// NOTE 2: this could also be an antiparallel pairing
constraint K105.O T148.N    2.3 2.7 3.2
constraint T107.N T148.O    2.3 2.7 3.2
constraint T107.O L150.N    2.3 2.7 3.2
constraint A109.N L150.O    2.3 2.7 3.2
constraint A109.O W152.N    2.3 2.7 3.2

// Constraints for antiparallel pairing of 8 & 9
// register may be off; strand 9 may not exist
constraint T164.O S222.N   2.3 2.7 3.2
constraint T164.N S222.O   2.3 2.7 3.2
constraint I162.O G220.N   2.3 2.7 3.2
constraint I162.N G220.O   2.3 2.7 3.2
constraint F160.O L218.N   2.3 2.7 3.2
constraint F160.N L218.O   2.3 2.7 3.2

// Constraints for antiparallel pairing of 9 & 10
// register may be off; strand 9 may not exist
constraint F223.O L248.N   2.3 2.7 3.2
constraint F223.N L248.O   2.3 2.7 3.2
constraint I221.O L250.N   2.3 2.7 3.2
constraint I221.N L250.O   2.3 2.7 3.2
constraint G219.O G252.N   2.3 2.7 3.2
constraint G219.N G252.O   2.3 2.7 3.2


// Constraints for antiparallel pairing of 10 & 11
constraint A242.O D263.N   2.3 2.7 3.2
constraint A242.N D263.O   2.3 2.7 3.2
constraint W247.O E265.N   2.3 2.7 3.2
constraint W247.N E265.O   2.3 2.7 3.2
constraint L249.O K267.N   2.3 2.7 3.2
constraint L249.N K267.O   2.3 2.7 3.2