PFRMAT SS
TARGET T0146
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0146.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 50
METHOD
MODEL 1
A E 0.334
F E 0.298
T E 0.311
P B 0.206
F C 0.154
P B 0.187
P H 0.215
R H 0.194
Q B 0.209
P H 0.261
T E 0.204
A H 0.237
S H 0.219
A H 0.292
R H 0.186
L B 0.257
P S 0.167
L E 0.289
T E 0.407
L A 0.397
M B 0.413
T E 0.390
L I 0.215
D H 0.358
D S 0.300
W S 0.208
A B 0.224
L E 0.458
A E 0.629
T E 0.621
I A 0.363
T S 0.176
G C 0.355
A H 0.439
D H 0.389
S H 0.719
E H 0.918
K H 0.925
Y H 0.921
M H 0.871
Q H 0.882
G H 0.897
Q H 0.860
V H 0.764
T H 0.788
A H 0.664
D H 0.595
V H 0.475
S H 0.684
Q S 0.494
M B 0.240
A C 0.483
E G 0.394
D S 0.674
Q B 0.250
H E 0.379
L E 0.319
L A 0.405
A E 0.409
A E 0.417
H E 0.416
C E 0.433
D C 0.806
A H 0.634
K B 0.600
G S 0.594
K B 0.423
M A 0.410
W E 0.195
S E 0.322
N E 0.386
L E 0.461
R E 0.570
L A 0.569
F E 0.463
R A 0.413
D D 0.259
G D 0.379
D S 0.328
G E 0.353
F E 0.674
A E 0.620
W E 0.628
I A 0.507
E B 0.464
R B 0.568
R I 0.559
S H 0.668
V H 0.396
R H 0.704
E H 0.836
P H 0.897
Q H 0.873
L H 0.901
T H 0.925
E H 0.864
L H 0.786
K H 0.796
K H 0.612
Y H 0.331
A H 0.456
V H 0.357
F H 0.245
S H 0.243
K E 0.413
V E 0.578
T E 0.578
I A 0.503
A B 0.411
P B 0.253
D B 0.207
D H 0.335
E H 0.619
R H 0.626
V H 0.579
L H 0.482
L H 0.466
G H 0.385
V H 0.320
A H 0.210
G B 0.192
F B 0.232
Q H 0.336
A H 0.605
R H 0.781
A H 0.811
A H 0.816
L H 0.732
A H 0.696
N H 0.655
L H 0.492
F H 0.259
S H 0.277
E S 0.243
L B 0.297
P H 0.220
S H 0.180
K H 0.320
E H 0.271
K E 0.194
Q H 0.246
V H 0.179
V B 0.184
K S 0.262
E B 0.208
G S 0.217
A E 0.342
T E 0.429
T E 0.396
L E 0.413
L E 0.251
W B 0.283
F H 0.220
E H 0.176
H B 0.185
P H 0.157
A C 0.187
E B 0.212
R S 0.356
F E 0.478
L E 0.547
I E 0.558
V E 0.339
T B 0.450
D B 0.565
E H 0.469
A H 0.697
T H 0.525
A H 0.807
N H 0.878
M H 0.879
L H 0.825
T H 0.787
D H 0.783
K H 0.766
L H 0.572
R H 0.441
G H 0.453
E H 0.331
A S 0.292
E B 0.230
L H 0.215
N B 0.296
N S 0.210
S H 0.516
Q H 0.761
Q H 0.870
W H 0.923
L H 0.919
A H 0.909
L H 0.883
N H 0.883
I H 0.801
E H 0.730
A B 0.616
G S 0.637
F B 0.395
P B 0.289
V E 0.161
I B 0.217
D E 0.188
A H 0.333
A H 0.274
N H 0.166
S H 0.282
G S 0.271
Q S 0.195
F E 0.267
I B 0.451
P H 0.302
Q H 0.621
A H 0.430
T H 0.294
N E 0.185
L H 0.238
Q H 0.422
A H 0.296
L B 0.302
G S 0.326
G E 0.274
I E 0.374
S E 0.411
F I 0.164
K H 0.155
K H 0.140
G D 0.395
C H 0.165
Y S 0.198
T H 0.438
G S 0.347
Q H 0.736
E H 0.861
M H 0.934
V H 0.920
A H 0.933
R H 0.915
A H 0.851
K H 0.732
F H 0.515
R B 0.541
G S 0.391
A B 0.405
N B 0.357
K E 0.250
R E 0.266
A E 0.460
L A 0.504
W E 0.380
L E 0.483
L E 0.509
A E 0.438
G E 0.261
S S 0.146
A B 0.210
S S 0.201
R C 0.372
L B 0.413
P B 0.351
E C 0.327
A G 0.250
G S 0.641
E B 0.428
D E 0.396
L E 0.392
E E 0.457
L E 0.331
K B 0.279
M B 0.298
G C 0.272
E H 0.277
N B 0.235
W S 0.362
R B 0.305
R E 0.331
T E 0.222
G B 0.235
T E 0.625
V A 0.452
L E 0.488
A E 0.365
A A 0.193
V B 0.203
K S 0.188
L E 0.234
E H 0.311
D H 0.302
G H 0.234
Q H 0.422
V H 0.621
V H 0.702
V H 0.791
Q H 0.774
V H 0.755
V H 0.561
M H 0.374
N H 0.487
N H 0.265
D S 0.292
M B 0.234
E H 0.210
P H 0.243
D S 0.335
S E 0.330
I E 0.573
F E 0.535
R E 0.494
V A 0.327
R D 0.186
D S 0.188
D B 0.215
A B 0.210
N E 0.268
T E 0.493
L E 0.523
H E 0.455
I A 0.296
E B 0.274
P B 0.306
L B 0.415
P E 0.253
Y E 0.251
S E 0.283
L I 0.226
E H 0.308
E H 0.223
END