# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1f15B 218 1.04e-01 1f15B b.10.1.2 23321 1blxA 326 3.02e-01 1hcl d.144.1.1 41596 1dq3A 454 3.57e-01 1dq3A b.86.1.2 28380 d.50.3.1 38798 d.95.2.2 40585 d.95.2.2 40586 1jr3E 334 5.74e-01 a.80.1.1 63253 c.37.1.13 63254 1eypA 222 5.80e-01 1eypA d.36.1.1 38536 1f15A 218 7.80e-01 1f15B b.10.1.2 23320 1agdA 276 8.57e-01 1agdA b.1.1.2 20741 d.19.1.1 38260 1tdj 514 1.01e+00 1tdj c.79.1.1 35297 d.58.18.2 39356 d.58.18.2 39357 1jl3A 139 1.39e+00 c.44.1.1 66826 1cfzA 162 1.54e+00 1cfzA c.56.1.1 33754 1swuA 127 1.55e+00 1swuA b.61.1.1 27230 1jepA 222 1.59e+00 d.36.1.1 66612 1pcfA 66 1.72e+00 1pcfA d.18.1.1 38142 1mpgA 282 1.77e+00 1mpgA a.96.1.3 18747 d.129.1.2 41296 1lj5A 379 1.86e+00 1eyqA 222 2.20e+00 1eypA d.36.1.1 38534 1cuk 203 2.24e+00 1hjp a.5.1.1 16273 a.60.2.1 17946 b.40.4.2 25265 1a7cA 379 2.45e+00 1sek e.1.1.1 42660 1dxrH 258 2.57e+00 6prcH b.41.1.1 25456 f.2.1.2 43433 6prcH 258 2.57e+00 6prcH b.41.1.1 25457 f.2.1.2 43436 1ja1A 622 2.60e+00 1amoA b.43.4.1 62803 c.23.5.2 62804 c.25.1.4 62805 1j8mF 297 2.92e+00 1ng1 a.24.13.1 62742 c.37.1.10 62743 1cknA 330 3.01e+00 1ckmA b.40.4.6 25360 d.142.2.3 41587 1j9yA 385 3.06e+00 1j9yA c.1.8.3 62791 1cz4A 185 3.28e+00 1cz4A b.52.2.3 26934 d.31.1.1 38468 1ckmA 330 3.54e+00 1ckmA b.40.4.6 25358 d.142.2.3 41585 1kl9A 182 3.89e+00 2izgB 123 3.95e+00 1swuA b.61.1.1 27236 2izhB 123 3.95e+00 1swuA b.61.1.1 27234 1fgyA 127 4.05e+00 1faoA b.55.1.1 26976 1jx4A 352 4.44e+00 e.8.1.5 67405 1dcs 311 4.53e+00 1dcs b.82.2.1 28124 1qhlA 227 5.00e+00 1qhlA c.37.1.12 32382 1g5aA 628 5.01e+00 b.71.1.1 65152 c.1.8.1 65153 1a5t 334 5.06e+00 1a5t a.80.1.1 18450 c.37.1.13 32423 1ej0A 180 5.13e+00 1ej0A c.66.1.2 34179 1f35A 162 6.03e+00 1f35A b.94.1.1 59628 3aig 202 6.17e+00 1atlA d.92.1.9 40321 1fjgI 128 6.64e+00 1fjfI d.14.1.1 37559 1fo0A 116 6.67e+00 1tvdA b.1.1.1 20610 1amoA 615 6.76e+00 1amoA b.43.4.1 25669 c.23.5.2 31210 c.25.1.4 31557 1g7sA 594 7.02e+00 1g7rA b.43.3.1 25712 b.43.3.1 25713 c.20.1.1 31032 c.37.1.8 32147 1g7rA 594 7.03e+00 1g7rA b.43.3.1 25716 b.43.3.1 25717 c.20.1.1 31034 c.37.1.8 32149 1io1A 398 7.31e+00 1io1A e.32.1.1 62611 1g7tA 594 7.33e+00 1g7rA b.43.3.1 25714 b.43.3.1 25715 c.20.1.1 31033 c.37.1.8 32148 3lynA 136 7.50e+00 1lis a.19.1.1 16413 1c2pA 576 7.59e+00 1quvA e.8.1.4 43117 1hi0P 664 7.68e+00 1hi0P e.8.1.6 61051 1gx5A 536 7.79e+00 1jobA 162 7.81e+00 1f35A b.94.1.1 63207 1erjA 393 8.29e+00 1erjA b.69.4.1 27660 1ez1A 392 8.61e+00 1ez1A b.84.2.1 28248 c.30.1.1 31655 d.142.1.2 41500 1iq4A 179 8.84e+00 1iq4A d.77.1.1 62641 1nscA 390 9.21e+00 2qwc b.68.1.1 27591 1hfoA 113 9.24e+00 d.80.1.3 61006 1kid 203 9.63e+00 1derA c.8.5.1 30771 1hlrA 907 9.76e+00 a.56.1.1 65850 d.15.4.2 65851 d.41.1.1 65852 d.133.1.1 65853 35c8H 217 9.82e+00 8fabA b.1.1.1 20297 b.1.1.2 21289 1hjp 203 9.96e+00 1hjp a.5.1.1 16274 a.60.2.1 17947 b.40.4.2 25266 1csjA 531 1.01e+01 1quvA e.8.1.4 43120 1k0tA 80 1.07e+01 1a7tA 232 1.08e+01 1a7tA d.157.1.1 42041 1eyzA 392 1.09e+01 1ez1A b.84.2.1 28246 c.30.1.1 31653 d.142.1.2 41498 1ex2A 189 1.17e+01 1ex2A c.51.4.2 33225 1bio 228 1.18e+01 5ptp b.47.1.2 26314 2pfkA 320 1.18e+01 3pfk c.89.1.1 35577 7icd 416 1.18e+01 1iso c.77.1.1 35072 1gdoA 240 1.19e+01 1gdoA d.153.1.1 41804 1bgc 174 1.19e+01 1bgc a.26.1.1 16822 1j98A 157 1.23e+01 1j98A d.185.1.2 62755 1tgoA 773 1.38e+01 1tgoA c.55.3.5 33721 e.8.1.1 43010 1j7nB 776 1.42e+01 d.92.1.14 66412 d.92.1.14 66413 d.166.1.1 66414 1jl2A 156 1.44e+01 c.55.3.1 66822 1at3A 247 1.46e+01 1at3A b.57.1.1 27021 1jnyA 435 1.47e+01 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1a0p 290 1.52e+01 1a0p a.60.9.1 18105 d.163.1.1 42165 1im4A 221 1.56e+01 e.8.1.5 62581 1i45A 248 1.58e+01 1amk c.1.1.1 61665 1sriA 121 1.59e+01 1swuA b.61.1.1 27276 1jg8A 347 1.60e+01 1jg8A c.67.1.1 62946 1f06A 320 1.60e+01 1dapA c.2.1.3 59556 d.81.1.3 59557 1pfkA 320 1.63e+01 3pfk c.89.1.1 35575 7timA 247 1.67e+01 1amk c.1.1.1 28457 1fp6A 289 1.67e+01 1cp2A c.37.1.10 32243 1gl4B 98 1.69e+01 b.1.1.4 65288 2bc2A 227 1.69e+01 1a7tA d.157.1.1 42031 1dapA 320 1.77e+01 1dapA c.2.1.3 30053 d.81.1.3 39968 2bc2B 227 1.78e+01 1a7tA d.157.1.1 42032 1jjoC 261 1.80e+01 1lcyA 325 1.80e+01 1jeoA 180 1.80e+01 c.80.1.3 66611 1eq9A 222 1.83e+01 5ptp b.47.1.2 26068 1dktB 79 1.83e+01 1puc d.97.1.1 40688 1auvA 311 1.97e+01 1auvA c.30.1.5 31723 d.142.1.3 41558 1f6yA 262 2.06e+01 1f6yA c.1.21.2 29673 1ecrA 309 2.13e+01 1ecrA e.2.1.1 42678 1befA 181 2.14e+01 1befA b.47.1.3 26419 1h99A 224 2.18e+01 a.142.1.1 60814 a.142.1.1 60815 1h4wA 224 2.19e+01 b.47.1.2 65622 1fzoA 274 2.23e+01 1agdA b.1.1.2 60155 d.19.1.1 60156 1eudA 311 2.25e+01 2scuA c.2.1.8 30312 c.23.4.1 31140 1i1qA 520 2.26e+01 1qdlA d.161.1.1 61543 2hrvA 142 2.28e+01 2hrvA b.47.1.4 26429 1hhsA 664 2.31e+01 1hi0P e.8.1.6 61045 1fjgM 126 2.31e+01 1fjfM a.5.5.1 16293 1iso 416 2.33e+01 1iso c.77.1.1 35065 2frvB 536 2.33e+01 1h2rL e.18.1.1 43291 1etu 394 2.35e+01 1efcA c.37.1.8 64737 1jmxA 494 2.37e+01 a.3.1.7 66901 a.3.1.7 66902 b.1.1.6 66903 b.1.1.6 66904 b.61.4.1 66905 1jflA 228 2.41e+01 1jb0E 75 2.41e+01 1pse b.34.4.2 62824 1hrhA 136 2.41e+01 1rthA c.55.3.1 33577 1ab9C 97 2.41e+01 5ptp 1e8xA 961 2.46e+01 1e8xA a.118.1.6 19148 b.7.1.1 23183 d.15.1.5 37631 d.144.1.4 41711 3dapA 320 2.52e+01 1dapA c.2.1.3 30051 d.81.1.3 39966 1ecxA 384 2.58e+01 1ecxA c.67.1.3 34431 1kjqA 391 2.58e+01 1g4wR 383 2.59e+01 1g4uS a.24.11.1 16644 c.45.1.2 32692 1kgsA 225 2.60e+01 a.4.6.1 68596 c.23.1.1 68597 1a05A 358 2.61e+01 1cnzA c.77.1.1 35059 1epwA 1290 2.62e+01 b.29.1.6 24269 b.42.4.2 25614 d.92.1.7 40305 h.4.2.1 45785 1f3yA 165 2.68e+01 d.113.1.1 59635 1avqA 228 2.68e+01 1avqA c.52.1.13 33326 2rmcA 182 2.70e+01 2cpl b.62.1.1 27491 1qs2A 401 2.75e+01 1qs1A d.166.1.1 42268 d.166.1.1 42269 1g5pA 289 2.80e+01 1cp2A c.37.1.10 32253 1edt 271 2.81e+01 2ebn c.1.8.5 28993 1hgxA 183 2.82e+01 1tc1A c.61.1.1 34027 1tsm 316 2.85e+01 1bkpA d.117.1.1 41024 1fo8A 343 2.87e+01 1foaA c.68.1.10 59927 1hsbA 270 2.90e+01 1agdA b.1.1.2 20736 d.19.1.1 38257 1kq3A 376 2.94e+01 e.22.1.2 68790 1dkgD 383 2.95e+01 1ba1 c.55.1.1 33427 c.55.1.1 33428 1g7pA 274 3.05e+01 1ckeA 227 3.11e+01 1ckeA c.37.1.1 31846 1apa 266 3.18e+01 1qi7A d.165.1.1 42205 1qs1A 462 3.19e+01 1qs1A d.166.1.1 42260 d.166.1.1 42261 1foaA 348 3.19e+01 1foaA c.68.1.10 59929 1mgtA 174 3.22e+01 1mgtA a.4.2.1 16078 c.55.7.1 33753 1efuB 282 3.24e+01 1efuB a.5.2.2 58975 d.43.1.1 58976 d.43.1.1 38677 1b93B 152 3.24e+01 1b93A c.24.1.2 31508 1ho1A 242 3.26e+01 1ho1A c.1.24.1 61097 6pfkA 319 3.27e+01 3pfk c.89.1.1 35583 1cjcA 460 3.27e+01 1cjcA c.3.1.1 30319 c.4.1.1 30604 1go3F 107 3.29e+01 a.60.8.2 65407 1ezvB 352 3.39e+01 1ezvB d.185.1.1 59543 d.185.1.1 59544 1hyvA 166 3.43e+01 1b9dA c.55.3.2 61424 1jb0C 80 3.47e+01 1jb0C d.58.1.4 62822 1hdmB 193 3.48e+01 1hdmB b.1.1.2 21584 d.19.1.1 38158 1mmoD 512 3.51e+01 1mhyD a.25.1.2 16770 1g4uS 383 3.52e+01 1g4uS a.24.11.1 16643 c.45.1.2 32691 1d8hA 311 3.53e+01 1d8iA d.63.1.1 39544 1pszA 303 3.59e+01 1toaA c.92.2.2 35600 1nipA 289 3.69e+01 1cp2A c.37.1.10 32263 1dd5A 185 3.70e+01 1dd5A d.67.3.1 39564 1vid 221 3.71e+01 1vid c.66.1.1 34178 1fzkA 274 3.71e+01 1agdA b.1.1.2 60149 d.19.1.1 60150 1ljoA 77 3.77e+01 1fjgQ 105 3.78e+01 1fjfQ b.40.4.5 25352 1h8uA 117 3.96e+01 1h8uA d.169.1.1 60793 1gdoB 240 3.99e+01 1gdoA d.153.1.1 41805