// To be run from pce/casp5/t0144

SetSeed

InfilePrefix 
Include define-score.script

Time

MakeGenericFragmentLibrary
Time


// The following alignments are believed to be good:
InFilePrefix 
ReadFragmentAlignment T0144.t2k-2track-undertaker.a2m

InFilePrefix 
Include T0144.t2k.undertaker-align.script 

PrintAlignmentsPDB T0144.t2k.undertaker-align.pdb superpose

quit