PFRMAT SS TARGET T0144 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0144.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 396 METHOD MODEL 1 M C 0.839 S C 0.673 N C 0.581 P T 0.483 K E 0.534 V E 0.882 F E 0.900 F E 0.864 D E 0.811 M E 0.664 A E 0.660 I E 0.474 A T 0.582 G T 0.573 N T 0.404 P E 0.435 A E 0.404 G E 0.635 R E 0.887 I E 0.974 V E 0.992 M E 0.989 E E 0.972 L E 0.864 Y E 0.599 A T 0.643 D T 0.661 T T 0.551 T C 0.439 P H 0.496 R H 0.724 T H 0.907 A H 0.970 E H 0.977 N H 0.965 F H 0.987 R H 0.986 A H 0.975 L H 0.954 C H 0.810 T H 0.570 G T 0.435 E C 0.403 K C 0.448 G T 0.375 V C 0.304 G T 0.697 R T 0.835 S T 0.893 G T 0.814 K C 0.424 P E 0.436 L E 0.473 H E 0.353 Y E 0.344 K T 0.390 G T 0.510 S T 0.406 T E 0.648 F E 0.771 H E 0.844 R E 0.864 V E 0.744 I T 0.448 P T 0.816 N T 0.845 F E 0.474 M E 0.707 C E 0.678 Q E 0.499 G C 0.494 G C 0.495 D T 0.507 F T 0.573 T T 0.665 A T 0.706 G T 0.558 N T 0.569 G T 0.602 T T 0.477 G T 0.457 A T 0.430 E C 0.321 S T 0.334 I T 0.530 Y T 0.634 G T 0.708 A T 0.524 K C 0.498 F C 0.493 A C 0.536 D T 0.442 E T 0.520 N T 0.555 F T 0.543 I T 0.415 K T 0.490 R T 0.571 H T 0.538 T T 0.480 G T 0.594 P T 0.543 G T 0.389 I E 0.755 L E 0.816 S E 0.789 M E 0.751 A E 0.633 N E 0.467 A C 0.416 G C 0.435 A T 0.576 G T 0.766 T T 0.892 N T 0.790 G T 0.763 S T 0.386 Q E 0.723 F E 0.914 F E 0.958 I E 0.946 C E 0.919 T E 0.813 E E 0.510 K C 0.440 T T 0.420 E T 0.435 W T 0.440 L T 0.547 D T 0.700 G T 0.742 K T 0.581 H E 0.706 V E 0.929 V E 0.963 F E 0.898 G E 0.825 K E 0.760 V E 0.570 I T 0.537 E T 0.719 G T 0.750 M H 0.414 N H 0.580 V H 0.968 V H 0.989 R H 0.987 D H 0.984 I H 0.983 E H 0.975 K H 0.861 V H 0.537 G C 0.683 S T 0.537 G T 0.779 S T 0.868 G T 0.756 K T 0.498 T C 0.528 S C 0.456 R E 0.449 P E 0.635 V E 0.865 T E 0.941 I E 0.926 A E 0.778 D E 0.489 C C 0.405 G C 0.378 Q C 0.604 L C 0.750 S C 0.978 END