PFRMAT SS
TARGET T0144
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0144.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 396
METHOD
MODEL 1
M E 0.243
S E 0.245
N E 0.310
P E 0.216
K E 0.407
V E 0.542
F E 0.497
F E 0.429
D E 0.427
M E 0.520
A E 0.493
I F 0.199
A D 0.269
G S 0.548
N C 0.471
P A 0.189
A G 0.190
G D 0.248
R E 0.454
I E 0.551
V E 0.549
M E 0.451
E E 0.548
L E 0.355
Y E 0.252
A I 0.436
D H 0.380
T S 0.314
T B 0.535
P H 0.323
R H 0.729
T H 0.720
A H 0.831
E H 0.897
N H 0.859
F H 0.825
R H 0.803
A H 0.856
L H 0.694
C H 0.465
T H 0.311
G S 0.200
E H 0.154
K B 0.154
G C 0.224
V B 0.284
G C 0.308
R H 0.280
S B 0.346
G S 0.634
K B 0.393
P E 0.251
L E 0.187
H E 0.205
Y E 0.135
K G 0.259
G S 0.443
S B 0.305
T H 0.201
F E 0.247
H E 0.302
R E 0.334
V S 0.195
I B 0.259
P G 0.357
N S 0.316
F E 0.282
M E 0.448
C E 0.333
Q E 0.169
G B 0.161
G S 0.174
D E 0.299
F I 0.207
T B 0.190
A B 0.161
G C 0.189
N B 0.196
G S 0.226
T C 0.167
G S 0.216
A E 0.147
E B 0.237
S H 0.189
I S 0.242
Y H 0.179
G S 0.242
A B 0.290
K B 0.224
F B 0.252
A H 0.209
D E 0.210
E H 0.328
N S 0.270
F E 0.197
I H 0.210
K E 0.208
R E 0.200
H E 0.225
T S 0.160
G C 0.237
P H 0.207
G S 0.197
I E 0.366
L E 0.359
S E 0.263
M E 0.179
A B 0.190
N E 0.243
A B 0.192
G C 0.327
A B 0.167
G S 0.169
T H 0.152
N B 0.192
G S 0.250
S E 0.471
Q E 0.425
F E 0.599
F E 0.593
I E 0.571
C E 0.458
T E 0.211
E B 0.412
K E 0.196
T E 0.324
E I 0.239
W H 0.187
L S 0.192
D D 0.266
G S 0.352
K B 0.201
H E 0.467
V E 0.613
V A 0.394
F D 0.244
G C 0.247
K B 0.372
V A 0.384
I F 0.246
E H 0.269
G S 0.341
M H 0.668
N H 0.888
V H 0.898
V H 0.897
R H 0.925
D H 0.894
I H 0.694
E H 0.721
K H 0.413
V B 0.407
G E 0.226
S C 0.379
G H 0.383
S B 0.633
G S 0.749
K B 0.640
T E 0.438
S G 0.199
R B 0.564
P E 0.452
V E 0.592
T E 0.657
I E 0.445
A E 0.165
D A 0.239
C B 0.292
G S 0.347
Q B 0.317
L E 0.215
S E 0.212
END