# List of top-scoring protein chains for t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
2cpl	165	8.24e-30	2cpl	b.62.1.1	27420
1cwoA	165	1.08e-29	2cpl	b.62.1.1	27445
1awqA	164	1.21e-29	2cpl	b.62.1.1	27461
1awsA	164	1.04e-28	2cpl	b.62.1.1	27431
1dywA	173	4.25e-28	2cpl	b.62.1.1	27505
1cynA	178	6.42e-27	2cpl	b.62.1.1	27489
1qngA	170	6.59e-27	2cpl	b.62.1.1	27507
1ihgA	370	1.02e-26	2cpl	a.118.8.1	62380
				b.62.1.1	62381
1qnhA	170	1.34e-26	2cpl	b.62.1.1	27508
2rmcA	182	5.45e-26	2cpl	b.62.1.1	27491
1qoiA	177	9.10e-26	2cpl	b.62.1.1	27490
1a58	177	2.21e-25	2cpl	b.62.1.1	27495
2nul	164	2.53e-18	2cpl	b.62.1.1	27511
1clh	166	4.32e-18	2cpl	b.62.1.1	27512
1lopA	164	5.27e-18	2cpl	b.62.1.1	27510
1e3tA	203	4.86e+00	1d4oA	c.31.1.4	31749
1gkuB	1054	5.41e+00		c.37.1.16	65257
				c.37.1.16	65258
				e.10.1.1	65259
1gl9B	1054	5.98e+00		c.37.1.16	65291
				c.37.1.16	65292
				e.10.1.1	65293
1c4xA	285	8.52e+00	1c4xA	c.69.1.10	34684
1h67A	108	1.05e+01		a.40.1.1	65643
1cw3A	494	1.13e+01	1bpwA	c.82.1.1	35349
1fj2A	232	1.36e+01	1auoA	c.69.1.14	34720
2sil	381	1.37e+01	3sil	b.68.1.1	27543
1wdnA	226	1.46e+01	1lst	c.94.1.1	35816
1gggB	226	1.46e+01	1lst	c.94.1.1	35818
3sil	379	1.56e+01	3sil	b.68.1.1	27542
1dgnA	89	1.61e+01	1dgnA	a.77.1.1	18436
1a0tP	413	1.75e+01	1a0tP	f.4.3.2	43794
1a0sP	413	1.75e+01	1a0tP	f.4.3.2	43797
1f20A	435	1.84e+01		b.43.4.1	64932
				c.25.1.4	64933
1ldr	43	2.01e+01	1ajj	g.12.1.1	44616
1dr9A	201	2.09e+01	1dr9A	b.1.1.1	19762
				b.1.1.3	21684
1i8lA	208	2.15e+01	1dr9A	b.1.1.1	61970
				b.1.1.3	61971
1gpmA	525	2.88e+01	1gpmA	c.23.16.1	31405
				c.26.2.1	31608
				d.52.2.1	38826
1qmvA	197	3.24e+01	1qq2A	c.47.1.10	33066
1qibA	161	3.26e+01	1ck7A	d.92.1.11	40359
1fo3A	460	3.33e+01	1dl2A	a.102.2.1	18845
1ichA	112	3.36e+01			
2atjA	308	3.37e+01	1bgp	a.93.1.1	18675
3atjA	309	3.39e+01	1bgp	a.93.1.1	18677
1fmiA	458	3.50e+01	1dl2A	a.102.2.1	18846
1hx2A	60	3.64e+01	1hx2A	g.22.1.2	44898
1icpA	376	3.65e+01	1oyc	c.1.4.1	62270
1dmzA	158	3.67e+01	1qu5A	b.26.1.2	23921
1atjA	306	3.68e+01	1bgp	a.93.1.1	18679
7atjA	308	3.69e+01	1bgp	a.93.1.1	18673
1h6kA	757	3.83e+01		a.118.1.2	60675
				a.118.1.2	60676
				a.118.1.2	60677
1br1A	820	3.89e+01	1lvk	b.34.3.1	24564
				c.37.1.9	32161
1tvdA	116	3.92e+01	1tvdA	b.1.1.1	20650