# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1cwoA 165 1.50e-37 2cpl b.62.1.1 27445 1awsA 164 1.97e-37 2cpl b.62.1.1 27431 1awqA 164 2.23e-37 2cpl b.62.1.1 27461 2cpl 165 2.24e-37 2cpl b.62.1.1 27420 1dywA 173 5.28e-36 2cpl b.62.1.1 27505 1ihgA 370 6.01e-34 2cpl a.118.8.1 62380 b.62.1.1 62381 1qoiA 177 6.78e-33 2cpl b.62.1.1 27490 2rmcA 182 8.75e-33 2cpl b.62.1.1 27491 1a58 177 1.46e-32 2cpl b.62.1.1 27495 1lopA 164 2.60e-22 2cpl b.62.1.1 27510 1g7fA 298 3.69e-01 1pty c.45.1.2 60330 1eeoA 321 2.00e+00 1pty c.45.1.2 32655 2hnp 321 2.78e+00 1pty c.45.1.2 32678 1agx 331 3.03e+00 4pgaA c.88.1.1 35564 1ptvA 321 3.21e+00 1pty c.45.1.2 32665 1ck7A 631 3.26e+00 1ck7A a.20.1.2 58969 b.66.1.1 27538 d.92.1.11 58970 g.14.1.2 44674 g.14.1.2 44675 g.14.1.2 44676 1gggB 226 3.91e+00 1lst c.94.1.1 35818 1wdnA 226 4.02e+00 1lst c.94.1.1 35816 1dc1A 323 5.42e+00 1dc1A c.52.1.11 33321 1hxmD 242 5.85e+00 b.1.1.1 61373 b.1.1.2 61374 1eerB 227 6.12e+00 1eerB b.1.2.1 22011 b.1.2.1 22012 1bh5A 183 6.19e+00 1qipA d.32.1.1 38476 1pty 321 6.33e+00 1pty c.45.1.2 32656 1gc1H 229 7.24e+00 1gc1H b.1.1.1 20265 b.1.1.2 21265 1ffyA 917 1.07e+01 1qu2A a.27.1.1 16926 b.51.1.1 26891 c.26.1.1 31593 1qu2A 917 1.07e+01 1qu2A a.27.1.1 16925 b.51.1.1 26890 c.26.1.1 31592 2pkaA 80 1.39e+01 2pkaA b.47.1.2 26302 1qipA 183 1.41e+01 1qipA d.32.1.1 38470 1aps 98 1.42e+01 2acy d.58.10.1 39299 1qmpA 130 1.53e+01 1dz3A c.23.1.1 31106 1an8 208 1.71e+01 1an8 b.40.2.2 25202 d.15.6.1 37791 1a70 97 1.93e+01 1awd d.15.4.1 37678 1a8s 273 1.99e+01 1brt c.69.1.12 34710 2kaiA 80 2.15e+01 2pkaA b.47.1.2 26306 1dz3A 130 2.16e+01 1dz3A c.23.1.1 31105 1dr9A 201 2.16e+01 1dr9A b.1.1.1 19762 b.1.1.3 21684 1zncA 266 2.22e+01 2cba b.74.1.1 27955 1jer 138 2.23e+01 2cbp b.6.1.1 23022 1f39A 101 2.29e+01 1umuA b.87.1.1 28386 1ig8A 486 2.39e+01 2yhx c.55.1.3 64746 c.55.1.3 64747 1b77A 228 2.64e+01 1b77A d.131.1.2 41362 d.131.1.2 41363 1et9A 204 2.67e+01 1an8 b.40.2.2 25204 d.15.6.1 37793 2napA 723 2.81e+01 2napA b.52.2.2 26926 c.81.1.1 35334 1gw5S 142 2.84e+01 1c4rA 182 2.86e+01 1c4rA b.29.1.4 24229 1b2iA 83 2.88e+01 5hpgA g.14.1.1 44640 1ewnA 219 2.92e+01 1bnkA b.46.1.2 25762 1a0sP 413 2.96e+01 1a0tP f.4.3.2 43797 830cA 168 2.99e+01 1ck7A d.92.1.11 40400 1qcsA 211 3.08e+01 1qcsA b.52.2.3 26927 d.31.1.1 38461 1ja1A 622 3.12e+01 1amoA b.43.4.1 62803 c.23.5.2 62804 c.25.1.4 62805 1jdw 423 3.32e+01 1jdw d.126.1.2 41129 1eqjA 511 3.58e+01 1ejjA c.105.1.1 59495 c.76.1.3 59496 1ejjA 511 3.61e+01 1ejjA c.105.1.1 59422 c.76.1.3 59423 1eesA 178 3.76e+01 1eesA c.37.1.8 32073 1dmzA 158 3.84e+01 1qu5A b.26.1.2 23921