# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1cwoA 165 5.33e-30 2cpl b.62.1.1 27445 2cpl 165 7.40e-30 2cpl b.62.1.1 27420 1awqA 164 1.19e-29 2cpl b.62.1.1 27461 1awsA 164 1.34e-29 2cpl b.62.1.1 27431 1dywA 173 6.29e-29 2cpl b.62.1.1 27505 1ihgA 370 2.50e-27 2cpl a.118.8.1 62380 b.62.1.1 62381 1qoiA 177 9.01e-27 2cpl b.62.1.1 27490 2rmcA 182 1.30e-26 2cpl b.62.1.1 27491 1a58 177 1.78e-26 2cpl b.62.1.1 27495 1lopA 164 2.87e-18 2cpl b.62.1.1 27510 1ck7A 631 1.76e+00 1ck7A a.20.1.2 58969 b.66.1.1 27538 d.92.1.11 58970 g.14.1.2 44674 g.14.1.2 44675 g.14.1.2 44676 1agx 331 2.53e+00 4pgaA c.88.1.1 35564 1e8gA 560 3.91e+00 1qltA d.58.32.1 39455 d.145.1.1 41718 1qltA 560 4.49e+00 1qltA d.58.32.1 39457 d.145.1.1 41720 1wdnA 226 4.84e+00 1lst c.94.1.1 35816 1vaoA 560 5.10e+00 1qltA d.58.32.1 39461 d.145.1.1 41724 1ewnA 219 5.48e+00 1bnkA b.46.1.2 25762 1rgeA 96 6.03e+00 1rgeA d.1.1.1 36028 1gc1H 229 6.21e+00 1gc1H b.1.1.1 20265 b.1.1.2 21265 1gggB 226 6.32e+00 1lst c.94.1.1 35818 1gmpA 96 6.57e+00 1rgeA d.1.1.1 36036 1qmpA 130 7.97e+00 1dz3A c.23.1.1 31106 1hxmD 242 8.36e+00 b.1.1.1 61373 b.1.1.2 61374 2napA 723 8.50e+00 2napA b.52.2.2 26926 c.81.1.1 35334 1ffyA 917 9.12e+00 1qu2A a.27.1.1 16926 b.51.1.1 26891 c.26.1.1 31593 1qu2A 917 9.12e+00 1qu2A a.27.1.1 16925 b.51.1.1 26890 c.26.1.1 31592 1fa0B 537 9.18e+00 1fa0B d.58.16.1 39336 e.9.1.2 43230 1bh5A 183 9.39e+00 1qipA d.32.1.1 38476 1j7nB 776 1.02e+01 d.92.1.14 66412 d.92.1.14 66413 d.166.1.1 66414 1dz3A 130 1.06e+01 1dz3A c.23.1.1 31105 1b2iA 83 1.13e+01 5hpgA g.14.1.1 44640 1kskA 234 1.16e+01 1eesA 178 1.17e+01 1eesA c.37.1.8 32073 1a8s 273 1.21e+01 1brt c.69.1.12 34710 1extA 162 1.28e+01 1extA g.24.1.1 44900 g.24.1.1 44901 g.24.1.1 44902 1tvdA 116 1.29e+01 1tvdA b.1.1.1 20650 1befA 181 1.33e+01 1befA b.47.1.3 26419 1eqjA 511 1.41e+01 1ejjA c.105.1.1 59495 c.76.1.3 59496 1aps 98 1.44e+01 2acy d.58.10.1 39299 1f39A 101 1.50e+01 1umuA b.87.1.1 28386 1hdoA 206 1.54e+01 1he2A c.2.1.2 60965 1eeoA 321 1.55e+01 1pty c.45.1.2 32655 1tl2A 236 1.55e+01 1tl2A b.67.1.1 27541 1he2A 206 1.56e+01 1he2A c.2.1.2 60966 1j5eC 239 1.59e+01 1an8 208 1.61e+01 1an8 b.40.2.2 25202 d.15.6.1 37791 3sil 379 1.70e+01 3sil b.68.1.1 27542 1hr6A 475 1.71e+01 1hr6A d.185.1.1 61164 d.185.1.1 61165 1ejjA 511 1.71e+01 1ejjA c.105.1.1 59422 c.76.1.3 59423 1a70 97 1.73e+01 1awd d.15.4.1 37678 1g7fA 298 1.76e+01 1pty c.45.1.2 60330 1ciy 590 1.81e+01 1ciy b.18.1.3 23720 b.77.2.1 27977 f.1.3.1 43392 1ja1A 622 1.85e+01 1amoA b.43.4.1 62803 c.23.5.2 62804 c.25.1.4 62805 1hmy 327 1.86e+01 6mhtA c.66.1.10 34229 3cd4 182 1.89e+01 1cdy b.1.1.1 19720 b.1.1.3 21659 2sil 381 1.90e+01 3sil b.68.1.1 27543 1ptvA 321 2.02e+01 1pty c.45.1.2 32665 830cA 168 2.02e+01 1ck7A d.92.1.11 40400 1bnkA 216 2.10e+01 1bnkA b.46.1.2 25765 1jer 138 2.19e+01 2cbp b.6.1.1 23022 1qg0A 308 2.22e+01 1fnc b.43.4.2 25639 c.25.1.1 31529 1rom 403 2.25e+01 1rom a.104.1.1 18963 1yaiA 151 2.26e+01 1yaiA b.1.8.1 22289 1et9A 204 2.31e+01 1an8 b.40.2.2 25204 d.15.6.1 37793 1dc1A 323 2.34e+01 1dc1A c.52.1.11 33321 1gm6A 175 2.35e+01 1hq8A 123 2.45e+01 1b6e d.169.1.1 61127 1hfs 160 2.63e+01 1hfc d.92.1.11 40370 2hnp 321 2.66e+01 1pty c.45.1.2 32678 1b77A 228 2.75e+01 1b77A d.131.1.2 41362 d.131.1.2 41363 1ezwA 349 2.77e+01 1ezwA c.1.16.3 29558 1qubA 319 2.82e+01 1qubA g.18.1.1 44863 g.18.1.1 44864 g.18.1.1 44865 g.18.1.1 44866 g.18.1.1 44867 1cdi 179 2.86e+01 1cdy b.1.1.1 19727 b.1.1.3 21666 1fjgC 239 2.87e+01 1fjfC d.52.3.1 38831 d.53.1.1 38839 8fabB 224 2.91e+01 1igtB b.1.1.1 19773 b.1.1.2 20883 1hy7A 173 2.94e+01 d.92.1.11 65957 1fvuB 125 3.00e+01 1ixxB d.169.1.1 42346 1qipA 183 3.02e+01 1qipA d.32.1.1 38470 1eerB 227 3.12e+01 1eerB b.1.2.1 22011 b.1.2.1 22012 1fnc 314 3.22e+01 1fnc b.43.4.2 25627 c.25.1.1 31517 1fonA 240 3.28e+01 5ptp b.47.1.2 26231 1iw2A 182 3.34e+01 1lf7A 182 3.36e+01 1atg 231 3.37e+01 1atg c.94.1.1 35834 1a76 326 3.41e+01 1a76 a.60.7.1 18091 c.53.1.2 33361 2pii 112 3.42e+01 2pii d.58.5.1 39071 1kb5A 115 3.43e+01 1tvdA b.1.1.1 20611 1qj5A 429 3.44e+01 1dtyA c.67.1.4 34493 1j7nA 776 3.47e+01 d.92.1.14 66409 d.92.1.14 66410 d.166.1.1 66411 2occF 98 3.48e+01 2occF g.41.5.3 45256 1cjbA 231 3.67e+01 1qk3A c.61.1.1 34079 1a04A 215 3.68e+01 1a04A a.4.6.2 16234 c.23.1.1 31089 1kv9A 668 3.84e+01 2fgf 146 3.88e+01 1bfg b.42.1.1 25487 1f37A 110 3.88e+01 1f37A c.47.1.11 33088 1foeA 377 3.92e+01 1foeA a.87.1.1 18517 b.55.1.1 26969