PFRMAT SS
TARGET T0142
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0142.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 61
METHOD
MODEL 1
G C 0.597
S C 0.644
P C 0.698
P T 0.421
A T 0.479
Q T 0.374
L E 0.630
S E 0.874
V E 0.991
H E 0.990
T E 0.988
V E 0.972
S E 0.940
W E 0.856
N E 0.701
S E 0.421
G T 0.673
H T 0.650
E C 0.382
R C 0.512
A C 0.569
P C 0.427
T C 0.394
N C 0.364
L H 0.464
E H 0.573
E H 0.564
L H 0.522
L H 0.456
G T 0.329
L T 0.390
N T 0.477
S T 0.530
G T 0.529
E T 0.470
T C 0.507
P C 0.463
D E 0.509
V E 0.946
I E 0.982
A E 0.993
V E 0.981
A E 0.845
V E 0.618
Q E 0.607
G E 0.536
F C 0.315
G E 0.307
F T 0.265
Q T 0.332
T T 0.369
D T 0.402
K T 0.384
P T 0.435
Q T 0.446
Q T 0.410
G C 0.394
P H 0.674
A H 0.815
C H 0.903
V H 0.920
K H 0.936
N H 0.957
F H 0.963
Q H 0.910
S H 0.883
L H 0.820
L H 0.590
T T 0.503
S T 0.593
K T 0.651
G C 0.385
Y E 0.838
T E 0.958
K E 0.963
L E 0.913
K E 0.800
N E 0.666
T E 0.623
I E 0.404
T H 0.441
E H 0.730
T H 0.711
M H 0.581
G E 0.536
L E 0.698
T E 0.762
V E 0.838
Y E 0.849
C E 0.809
L E 0.558
E T 0.339
K T 0.497
H T 0.491
L T 0.507
D T 0.430
Q T 0.318
N E 0.488
T E 0.496
L E 0.541
K E 0.438
N E 0.359
E E 0.597
T E 0.673
I E 0.657
I E 0.788
V E 0.766
T E 0.777
V E 0.710
D E 0.416
D T 0.471
Q T 0.498
K T 0.467
K C 0.436
S C 0.406
G E 0.638
G E 0.825
I E 0.974
V E 0.992
T E 0.992
S E 0.994
F E 0.986
T E 0.985
I E 0.964
Y E 0.665
N T 0.608
K E 0.564
R E 0.875
F E 0.962
S E 0.978
F E 0.965
T E 0.921
T E 0.734
S E 0.345
R H 0.260
M H 0.328
S T 0.319
D H 0.365
E T 0.469
D T 0.493
V H 0.430
T H 0.474
S H 0.795
T H 0.845
N H 0.847
T H 0.883
K H 0.937
Y H 0.971
A H 0.974
Y H 0.995
D H 0.994
T H 0.989
R H 0.988
L H 0.974
D H 0.942
Y H 0.871
S H 0.547
K C 0.550
K C 0.453
D T 0.536
D T 0.536
P T 0.442
S T 0.419
D C 0.444
F E 0.915
L E 0.977
F E 0.973
W E 0.954
I E 0.792
G E 0.496
D T 0.583
L T 0.480
N E 0.497
V E 0.679
R E 0.686
V E 0.602
E T 0.359
T T 0.424
N C 0.429
A H 0.518
T H 0.785
H H 0.904
A H 0.961
K H 0.967
S H 0.955
L H 0.943
V H 0.904
D H 0.876
Q H 0.789
N C 0.468
N C 0.530
I H 0.782
D H 0.738
G H 0.708
L H 0.719
M H 0.776
A H 0.865
F H 0.852
D H 0.760
Q H 0.904
L H 0.948
K H 0.957
K H 0.926
A H 0.895
K H 0.840
E H 0.548
Q T 0.397
K T 0.502
L T 0.440
F T 0.529
D T 0.623
G T 0.638
W T 0.519
T E 0.386
E E 0.391
P C 0.415
Q C 0.493
V C 0.381
T C 0.512
F C 0.553
K C 0.566
P C 0.673
T C 0.450
Y E 0.427
K C 0.495
F C 0.539
K T 0.522
P T 0.676
N T 0.820
T T 0.806
D T 0.619
E T 0.680
Y T 0.663
D T 0.676
L T 0.712
S T 0.626
A T 0.429
T C 0.519
P C 0.454
S T 0.435
W T 0.361
T T 0.457
D C 0.355
R E 0.642
A E 0.782
L E 0.836
Y E 0.739
K E 0.350
S T 0.554
G T 0.644
T T 0.679
G T 0.591
K T 0.535
T T 0.406
I E 0.492
Q E 0.720
P E 0.805
L E 0.703
S E 0.589
Y E 0.446
N T 0.340
S T 0.355
L T 0.499
T T 0.588
N T 0.459
Y C 0.320
K E 0.339
Q T 0.338
T T 0.521
E T 0.511
H T 0.521
R T 0.440
P C 0.496
V E 0.543
L E 0.873
A E 0.952
K E 0.975
F E 0.984
R E 0.923
V E 0.827
T E 0.589
L C 0.938
END