PFRMAT SS TARGET T0142 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0142.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 61 METHOD MODEL 1 G C 0.597 S C 0.644 P C 0.698 P T 0.421 A T 0.479 Q T 0.374 L E 0.630 S E 0.874 V E 0.991 H E 0.990 T E 0.988 V E 0.972 S E 0.940 W E 0.856 N E 0.701 S E 0.421 G T 0.673 H T 0.650 E C 0.382 R C 0.512 A C 0.569 P C 0.427 T C 0.394 N C 0.364 L H 0.464 E H 0.573 E H 0.564 L H 0.522 L H 0.456 G T 0.329 L T 0.390 N T 0.477 S T 0.530 G T 0.529 E T 0.470 T C 0.507 P C 0.463 D E 0.509 V E 0.946 I E 0.982 A E 0.993 V E 0.981 A E 0.845 V E 0.618 Q E 0.607 G E 0.536 F C 0.315 G E 0.307 F T 0.265 Q T 0.332 T T 0.369 D T 0.402 K T 0.384 P T 0.435 Q T 0.446 Q T 0.410 G C 0.394 P H 0.674 A H 0.815 C H 0.903 V H 0.920 K H 0.936 N H 0.957 F H 0.963 Q H 0.910 S H 0.883 L H 0.820 L H 0.590 T T 0.503 S T 0.593 K T 0.651 G C 0.385 Y E 0.838 T E 0.958 K E 0.963 L E 0.913 K E 0.800 N E 0.666 T E 0.623 I E 0.404 T H 0.441 E H 0.730 T H 0.711 M H 0.581 G E 0.536 L E 0.698 T E 0.762 V E 0.838 Y E 0.849 C E 0.809 L E 0.558 E T 0.339 K T 0.497 H T 0.491 L T 0.507 D T 0.430 Q T 0.318 N E 0.488 T E 0.496 L E 0.541 K E 0.438 N E 0.359 E E 0.597 T E 0.673 I E 0.657 I E 0.788 V E 0.766 T E 0.777 V E 0.710 D E 0.416 D T 0.471 Q T 0.498 K T 0.467 K C 0.436 S C 0.406 G E 0.638 G E 0.825 I E 0.974 V E 0.992 T E 0.992 S E 0.994 F E 0.986 T E 0.985 I E 0.964 Y E 0.665 N T 0.608 K E 0.564 R E 0.875 F E 0.962 S E 0.978 F E 0.965 T E 0.921 T E 0.734 S E 0.345 R H 0.260 M H 0.328 S T 0.319 D H 0.365 E T 0.469 D T 0.493 V H 0.430 T H 0.474 S H 0.795 T H 0.845 N H 0.847 T H 0.883 K H 0.937 Y H 0.971 A H 0.974 Y H 0.995 D H 0.994 T H 0.989 R H 0.988 L H 0.974 D H 0.942 Y H 0.871 S H 0.547 K C 0.550 K C 0.453 D T 0.536 D T 0.536 P T 0.442 S T 0.419 D C 0.444 F E 0.915 L E 0.977 F E 0.973 W E 0.954 I E 0.792 G E 0.496 D T 0.583 L T 0.480 N E 0.497 V E 0.679 R E 0.686 V E 0.602 E T 0.359 T T 0.424 N C 0.429 A H 0.518 T H 0.785 H H 0.904 A H 0.961 K H 0.967 S H 0.955 L H 0.943 V H 0.904 D H 0.876 Q H 0.789 N C 0.468 N C 0.530 I H 0.782 D H 0.738 G H 0.708 L H 0.719 M H 0.776 A H 0.865 F H 0.852 D H 0.760 Q H 0.904 L H 0.948 K H 0.957 K H 0.926 A H 0.895 K H 0.840 E H 0.548 Q T 0.397 K T 0.502 L T 0.440 F T 0.529 D T 0.623 G T 0.638 W T 0.519 T E 0.386 E E 0.391 P C 0.415 Q C 0.493 V C 0.381 T C 0.512 F C 0.553 K C 0.566 P C 0.673 T C 0.450 Y E 0.427 K C 0.495 F C 0.539 K T 0.522 P T 0.676 N T 0.820 T T 0.806 D T 0.619 E T 0.680 Y T 0.663 D T 0.676 L T 0.712 S T 0.626 A T 0.429 T C 0.519 P C 0.454 S T 0.435 W T 0.361 T T 0.457 D C 0.355 R E 0.642 A E 0.782 L E 0.836 Y E 0.739 K E 0.350 S T 0.554 G T 0.644 T T 0.679 G T 0.591 K T 0.535 T T 0.406 I E 0.492 Q E 0.720 P E 0.805 L E 0.703 S E 0.589 Y E 0.446 N T 0.340 S T 0.355 L T 0.499 T T 0.588 N T 0.459 Y C 0.320 K E 0.339 Q T 0.338 T T 0.521 E T 0.511 H T 0.521 R T 0.440 P C 0.496 V E 0.543 L E 0.873 A E 0.952 K E 0.975 F E 0.984 R E 0.923 V E 0.827 T E 0.589 L C 0.938 END