PFRMAT SS TARGET T0142 AUTHOR 4069-6308-1312 METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 7 (1 EBGHSTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0142.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 61 METHOD MODEL 1 G C 0.999 S C 0.962 P C 0.817 P C 0.480 A S 0.335 Q E 0.349 L E 0.760 S E 0.960 V E 0.978 H E 0.973 T E 0.962 V E 0.936 S E 0.757 W E 0.539 N E 0.374 S C 0.370 G C 0.310 H C 0.318 E C 0.446 R C 0.557 A C 0.758 P C 0.517 T H 0.286 N H 0.420 L H 0.493 E H 0.579 E H 0.626 L H 0.643 L H 0.548 G H 0.324 L C 0.423 N C 0.511 S T 0.352 G T 0.313 E C 0.433 T C 0.596 P C 0.671 D E 0.458 V E 0.969 I E 0.994 A E 0.997 V E 0.984 A E 0.859 V E 0.661 Q E 0.628 G E 0.598 F E 0.445 G C 0.374 F C 0.280 Q H 0.266 T H 0.243 D H 0.301 K T 0.290 P H 0.256 Q C 0.341 Q C 0.374 G C 0.375 P H 0.675 A H 0.755 C H 0.915 V H 0.966 K H 0.964 N H 0.963 F H 0.957 Q H 0.925 S H 0.908 L H 0.815 L H 0.476 T C 0.384 S S 0.317 K T 0.329 G S 0.291 Y E 0.705 T E 0.880 K E 0.894 L E 0.882 K E 0.788 N E 0.622 T E 0.534 I E 0.565 T E 0.587 E E 0.600 T E 0.755 M E 0.829 G E 0.836 L E 0.802 T E 0.841 V E 0.803 Y E 0.798 C E 0.539 L C 0.469 E G 0.359 K G 0.335 H G 0.378 L H 0.306 D T 0.312 Q H 0.261 N C 0.285 T C 0.251 L C 0.293 K C 0.511 N C 0.446 E C 0.366 T E 0.377 I E 0.440 I E 0.466 V E 0.419 T E 0.397 V C 0.281 D C 0.282 D T 0.270 Q T 0.486 K T 0.366 K C 0.451 S S 0.329 G E 0.367 G E 0.503 I E 0.875 V E 0.974 T E 0.983 S E 0.990 F E 0.975 T E 0.964 I E 0.871 Y E 0.407 N T 0.668 K S 0.316 R E 0.831 F E 0.935 S E 0.967 F E 0.979 T E 0.960 T E 0.911 S E 0.699 R E 0.538 M E 0.339 S C 0.280 D T 0.402 E T 0.493 D H 0.270 V H 0.344 T H 0.376 S H 0.525 T H 0.545 N H 0.563 T H 0.661 K H 0.823 Y H 0.874 A H 0.922 Y H 0.984 D H 0.989 T H 0.989 R H 0.985 L H 0.963 D H 0.806 Y H 0.535 S C 0.363 K C 0.301 K C 0.334 D C 0.439 D S 0.305 P T 0.409 S C 0.388 D E 0.435 F E 0.821 L E 0.959 F E 0.978 W E 0.955 I E 0.762 G E 0.543 D C 0.412 L T 0.384 N T 0.274 V C 0.282 R C 0.308 V C 0.378 E C 0.502 T C 0.331 N C 0.421 A H 0.779 T H 0.902 H H 0.935 A H 0.953 K H 0.958 S H 0.945 L H 0.920 V H 0.851 D H 0.760 Q H 0.549 N T 0.445 N C 0.445 I H 0.769 D H 0.835 G H 0.813 L H 0.817 M H 0.782 A H 0.749 F H 0.733 D H 0.675 Q H 0.722 L H 0.782 K H 0.834 K H 0.715 A H 0.652 K H 0.566 E T 0.444 Q T 0.422 K C 0.534 L C 0.367 F C 0.396 D C 0.286 G T 0.294 W C 0.345 T C 0.409 E C 0.463 P C 0.566 Q C 0.627 V C 0.863 T C 0.818 F C 0.477 K C 0.786 P C 0.474 T C 0.417 Y C 0.400 K C 0.514 F C 0.450 K C 0.594 P T 0.665 N T 0.673 T C 0.467 D C 0.346 E T 0.357 Y T 0.391 D T 0.384 L S 0.473 S C 0.547 A E 0.419 T C 0.559 P C 0.517 S C 0.427 W C 0.284 T E 0.361 D E 0.424 R E 0.584 A E 0.621 L E 0.669 Y E 0.639 K E 0.418 S C 0.316 G C 0.337 T C 0.468 G C 0.428 K C 0.287 T C 0.305 I E 0.413 Q E 0.496 P E 0.510 L E 0.487 S E 0.424 Y E 0.324 N C 0.255 S C 0.324 L C 0.430 T T 0.260 N E 0.288 Y E 0.425 K E 0.601 Q E 0.465 T C 0.439 E C 0.388 H S 0.536 R C 0.398 P E 0.468 V E 0.784 L E 0.893 A E 0.943 K E 0.967 F E 0.974 R E 0.955 V E 0.823 T E 0.635 L C 0.995 END