# List of top-scoring protein chains for t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1i9zA 347 2.84e-54 1i9yA d.151.1.2 62102 1i9yA 347 2.84e-54 1i9yA d.151.1.2 62101 1ako 268 4.50e-04 1ako d.151.1.1 41779 1de8A 276 9.29e-03 1bix d.151.1.1 41788 1dewB 279 9.95e-03 1bix d.151.1.1 41787 1bix 287 1.38e-02 1bix d.151.1.1 41781 1hd7A 318 3.24e-02 1bix d.151.1.1 41780 1atnD 260 8.50e-01 3dni d.151.1.1 41793 3dni 260 1.06e+00 3dni d.151.1.1 41791 2dnjA 260 1.06e+00 3dni d.151.1.1 41790 1smvA 260 1.18e+00 1smvA b.10.1.2 23288 1ka8A 100 1.55e+00 1bngC 110 2.33e+00 1b20A d.1.1.1 36186 1avqA 228 3.14e+00 1avqA c.52.1.13 33326 1pciA 322 3.21e+00 1cs8A d.3.1.1 37022 1a0hA 159 3.66e+00 1a0hA b.47.1.2 26229 g.14.1.1 44655 1hyhA 309 5.24e+00 1hyhA c.2.1.5 30150 d.162.1.1 42117 1el6A 219 6.57e+00 1el6B d.182.1.1 42606 1el6B 219 6.57e+00 1el6B d.182.1.1 42607 1fo0A 116 7.36e+00 1tvdA b.1.1.1 20610 1baoA 110 8.26e+00 1b20A d.1.1.1 36187 1b0fA 218 9.38e+00 1a7s b.47.1.2 26237 1hneE 218 9.45e+00 1a7s b.47.1.2 26235 2ldx 331 1.04e+01 3ldh c.2.1.5 30159 d.162.1.1 42126 4sbvA 261 1.05e+01 1smvA b.10.1.2 23299 1et9A 204 1.06e+01 1an8 b.40.2.2 25204 d.15.6.1 37793 1cj0A 470 1.08e+01 1bj4A c.67.1.4 34473 1ppfE 218 1.11e+01 1a7s b.47.1.2 26234 1ppgE 218 1.12e+01 1a7s b.47.1.2 26236 1avgL 41 1.28e+01 1ppbL b.47.1.2 26216 1dnpA 471 1.49e+01 1qnf a.99.1.1 18775 c.28.1.1 31630 1gqpA 221 1.62e+01 1dob 394 1.69e+01 1pbe c.3.1.2 30362 d.16.1.2 37893 1g68A 271 1.84e+01 1btl e.3.1.1 42705 1cc6A 394 2.10e+01 1pbe c.3.1.2 30344 d.16.1.2 37875 1ton 235 2.15e+01 5ptp b.47.1.2 26307 1tbrJ 49 2.16e+01 1ppbL b.47.1.2 26218 1i2mD 402 2.47e+01 1a12A b.69.5.1 61571 1krs 120 2.52e+01 1krs b.40.4.1 25256 1g6aA 271 2.54e+01 1btl e.3.1.1 42704 1brhC 110 2.62e+01 1b20A d.1.1.1 36153 1bsdA 110 2.66e+01 1b20A d.1.1.1 36200 1b2sA 110 2.72e+01 1b20A d.1.1.1 36213 1brgB 108 2.73e+01 1b20A d.1.1.1 36191 1cknA 330 2.74e+01 1ckmA b.40.4.6 25360 d.142.2.3 41587 1ckmA 330 2.74e+01 1ckmA b.40.4.6 25358 d.142.2.3 41585 1a2pA 110 2.75e+01 1b20A d.1.1.1 36140 1brnL 110 2.75e+01 1b20A d.1.1.1 36143 1bnsC 110 2.77e+01 1b20A d.1.1.1 36180 1cknB 330 2.80e+01 1ckmA b.40.4.6 25361 d.142.2.3 41588 1a12A 413 2.84e+01 1a12A b.69.5.1 27663 1jd0A 263 2.86e+01 2cba b.74.1.1 62888 1rnbA 110 2.90e+01 1b20A d.1.1.1 36196 1opbA 135 2.91e+01 1hmt b.60.1.2 27216 1opaA 135 2.91e+01 1hmt b.60.1.2 27214 2prd 174 2.91e+01 2prd b.40.5.1 25435 1eiiA 134 2.91e+01 1hmt b.60.1.2 27221 1hqaA 449 2.96e+01 1b8jA c.76.1.1 34998 1ffkI 194 2.98e+01 1ffkI d.12.1.2 37494 1brkA 110 2.99e+01 1b20A d.1.1.1 36148 1alhA 446 3.02e+01 1b8jA c.76.1.1 35016 1jjvA 206 3.03e+01 1f0iA 504 3.10e+01 1f0iA d.136.1.2 59566 d.136.1.2 59567 1jq6A 256 3.13e+01 b.57.1.1 63226 1b3sA 110 3.17e+01 1b20A d.1.1.1 36229 1aliA 449 3.25e+01 1b8jA c.76.1.1 34996 1banC 110 3.34e+01 1b20A d.1.1.1 36199 2btvA 901 3.35e+01 2btvA e.28.1.1 43376 1d6nA 214 3.37e+01 1qk3A c.61.1.1 34077 1b2zA 110 3.42e+01 1b20A d.1.1.1 36216 1bsaC 110 3.44e+01 1b20A d.1.1.1 36171 1hjkA 449 3.44e+01 1b8jA c.76.1.1 35006 1elzA 449 3.46e+01 1b8jA c.76.1.1 35022 1ed8A 449 3.47e+01 1b8jA c.76.1.1 34988 1elxA 449 3.48e+01 1b8jA c.76.1.1 35026 1b8jA 449 3.48e+01 1b8jA c.76.1.1 34992 1ajbA 449 3.48e+01 1b8jA c.76.1.1 35012 1elyA 449 3.51e+01 1b8jA c.76.1.1 35028 1bzyA 217 3.52e+01 1qk3A c.61.1.1 34071 1hmpA 217 3.52e+01 1qk3A c.61.1.1 34075 1grl 548 3.61e+01 1derA a.129.1.1 19487 c.8.5.1 30816 d.56.1.1 38935 1oelA 547 3.64e+01 1derA a.129.1.1 19452 c.8.5.1 30781 d.56.1.1 38900 1gr5A 547 3.64e+01 i.16.1.1 65478 1derA 547 3.64e+01 1derA a.129.1.1 19459 c.8.5.1 30788 d.56.1.1 38907 1qmuA 380 3.68e+01 1qmuA b.3.2.1 22534 c.56.5.1 33827 1gruA 547 3.78e+01 i.16.1.1 65508 1eh8A 207 3.79e+01 1sfe a.4.2.1 16077 c.55.7.1 33752 1eh7A 207 3.79e+01 1sfe a.4.2.1 16075 c.55.7.1 33750 1gcyA 527 3.86e+01 1jdc b.71.1.1 27788 c.1.8.1 28775 1qltA 560 3.87e+01 1qltA d.58.32.1 39457 d.145.1.1 41720 2anhA 446 3.91e+01 1b8jA c.76.1.1 35004 1vaoA 560 3.95e+01 1qltA d.58.32.1 39461 d.145.1.1 41724 1meg 216 3.98e+01 1cs8A d.3.1.1 37021