# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1i9yA 347 6.72e-65 1i9yA d.151.1.2 62101 1i9zA 347 8.13e-65 1i9yA d.151.1.2 62102 1ako 268 3.96e-07 1ako d.151.1.1 41779 1bix 287 6.08e-05 1bix d.151.1.1 41781 3dni 260 7.99e-05 3dni d.151.1.1 41791 2dnjA 260 1.31e-04 3dni d.151.1.1 41790 1hd7A 318 2.68e-04 1bix d.151.1.1 41780 1i88A 389 3.43e-01 c.95.1.2 66070 c.95.1.2 66071 1dpgA 485 3.68e-01 1dpgA c.2.1.3 30074 d.81.1.5 39989 1pbe 394 7.13e-01 1pbe c.3.1.2 30338 d.16.1.2 37869 2dpg 485 7.29e-01 1dpgA c.2.1.3 30076 d.81.1.5 39991 1bgj 394 7.59e-01 1pbe c.3.1.2 30352 d.16.1.2 37883 1efcA 393 7.88e-01 1efcA b.43.3.1 25680 b.44.1.1 25720 c.37.1.8 32113 1g6aA 271 1.03e+00 1btl e.3.1.1 42704 1qhoA 686 1.29e+00 1cxlA b.1.1.5 21844 b.3.1.1 22513 b.71.1.1 27751 c.1.8.1 28738 1ppfE 218 1.30e+00 1a7s b.47.1.2 26234 1k0iA 394 1.36e+00 c.3.1.2 67942 d.16.1.2 67943 1kk1A 410 1.63e+00 2phh 394 2.06e+00 1pbe c.3.1.2 30353 d.16.1.2 37884 1ddgA 374 2.47e+00 1amoA b.43.4.1 25671 c.25.1.4 31559 1ton 235 2.66e+00 5ptp b.47.1.2 26307 1cknA 330 2.70e+00 1ckmA b.40.4.6 25360 d.142.2.3 41587 1jnyA 435 3.20e+00 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1vokA 200 3.91e+00 1ytbA d.129.1.1 41242 d.129.1.1 41243 1czsA 160 5.00e+00 1cztA b.18.1.2 23714 1cztA 160 5.00e+00 1cztA b.18.1.2 23715 1ho1A 242 5.00e+00 1ho1A c.1.24.1 61097 1fc4A 401 5.07e+00 1bs0A c.67.1.4 59760 1d2eA 397 5.37e+00 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1fjmA 330 5.59e+00 1auiA d.159.1.3 42082 1ckmA 330 5.61e+00 1ckmA b.40.4.6 25358 d.142.2.3 41585 1amj 754 5.82e+00 1amj c.8.2.1 30725 c.83.1.1 35401 1a2pA 110 6.02e+00 1b20A d.1.1.1 36140 8acn 754 6.04e+00 1amj c.8.2.1 30724 c.83.1.1 35400 1brnL 110 6.18e+00 1b20A d.1.1.1 36143 1rnbA 110 6.41e+00 1b20A d.1.1.1 36196 1jk7A 323 6.60e+00 1auiA d.159.1.3 63144 1cs8A 316 6.61e+00 1cs8A d.3.1.1 37065 2fcr 173 6.91e+00 1rcf c.23.5.1 31151 1d5tA 433 6.96e+00 1gnd c.3.1.3 30422 d.16.1.6 37986 1qnaA 200 7.13e+00 1ytbA d.129.1.1 41226 d.129.1.1 41227 1k0gA 453 7.24e+00 d.161.1.1 67940 1memA 215 8.07e+00 1cs8A d.3.1.1 37069 1gkuB 1054 8.84e+00 c.37.1.16 65257 c.37.1.16 65258 e.10.1.1 65259 1b20A 110 9.18e+00 1b20A d.1.1.1 36207 1djxB 624 9.94e+00 1djxB a.39.1.7 17343 b.7.1.1 23160 c.1.18.1 29588 1elyA 449 1.00e+01 1b8jA c.76.1.1 35028 1jjvA 206 1.04e+01 1gnd 447 1.05e+01 1gnd c.3.1.3 30423 d.16.1.6 37987 1b3qA 379 1.07e+01 1b3qA a.30.2.1 16993 b.40.7.1 25454 d.122.1.3 41112 1g1tA 157 1.09e+01 d.169.1.1 65104 g.3.11.1 65105 1mpyA 307 1.13e+01 1mpyA d.32.1.3 38508 d.32.1.3 38509 1i86A 389 1.17e+01 c.95.1.2 66068 c.95.1.2 66069 1c0nA 406 1.19e+01 1c0nA c.67.1.3 34433 1eriA 276 1.21e+01 1ckqA c.52.1.1 33231 1cgt 684 1.25e+01 1cxlA b.1.1.5 21815 b.3.1.1 22484 b.71.1.1 27722 c.1.8.1 28709 1aqzA 149 1.25e+01 1aqzA d.1.1.1 36238 1qexA 288 1.29e+01 1qexA b.32.1.1 24425 1dp4A 435 1.38e+01 1dp4A c.93.1.1 35710 1afb1 154 1.39e+01 1rtm1 1i50B 1224 1.48e+01 e.29.1.2 61755 1qc9A 276 1.52e+01 1ckqA c.52.1.1 33235 1ei5A 520 1.54e+01 1ei5A b.61.3.1 27418 b.61.3.1 27419 e.3.1.1 42772 1kh5A 449 1.56e+01 1e39A 571 1.57e+01 1qjdA a.138.1.3 19694 c.3.1.4 30431 d.168.1.1 42314 1f0lA 535 1.59e+01 1ddt b.2.1.1 22377 d.166.1.1 42239 f.1.2.1 43382 1djxA 624 1.59e+01 1djxB a.39.1.7 17342 b.7.1.1 23159 c.1.18.1 29587 2anhA 446 1.63e+01 1b8jA c.76.1.1 35004 1qjdA 571 1.65e+01 1qjdA a.138.1.3 19695 c.3.1.4 30432 d.168.1.1 42315 6acn 754 1.69e+01 1amj c.8.2.1 30721 c.83.1.1 35397 1ed8A 449 1.71e+01 1b8jA c.76.1.1 34988 1gp4A 356 1.74e+01 b.82.2.1 65439 2fcpA 723 1.76e+01 1by5A f.4.3.3 43802 1aqzB 149 1.85e+01 1aqzA d.1.1.1 36239 1qfgA 725 1.86e+01 1by5A f.4.3.3 43803 1ppo 216 1.87e+01 1cs8A d.3.1.1 37020 1gjwA 637 1.89e+01 b.71.1.1 60582 c.1.8.1 60583 1b8jA 449 1.89e+01 1b8jA c.76.1.1 34992 1gp6A 356 1.89e+01 b.82.2.1 65441 1bi5A 389 1.89e+01 1bi5A c.95.1.2 35985 c.95.1.2 35986 1alkA 449 1.90e+01 1b8jA c.76.1.1 34994 1cb8A 678 1.91e+01 1cb8A a.102.3.2 18849 b.24.1.1 23898 b.30.3.1 24422 1gtrA 553 1.91e+01 1gtrA b.53.1.2 26939 c.26.1.1 31578 7acn 754 1.91e+01 1amj c.8.2.1 30717 c.83.1.1 35393 1jg1A 235 1.92e+01 c.66.1.7 66661 1b0jA 754 1.96e+01 1amj c.8.2.1 30719 c.83.1.1 35395 1c96A 753 1.96e+01 1amj c.8.2.1 30727 c.83.1.1 35403 1qpsA 261 1.97e+01 1ckqA c.52.1.1 33234 1ej6A 1289 2.01e+01 i.7.1.1 45967 1ush 550 2.02e+01 1ush d.114.1.1 40923 d.159.1.2 42079 1esl 162 2.05e+01 1esl d.169.1.1 42353 g.3.11.1 44225 1bhe 376 2.05e+01 1bhe b.80.1.3 28030 1gv9A 260 2.06e+01 1cdwA 179 2.07e+01 1ytbA d.129.1.1 41212 d.129.1.1 41213 9ldtA 332 2.16e+01 3ldh c.2.1.5 30154 d.162.1.1 42121 1cl8A 276 2.23e+01 1ckqA c.52.1.1 33230 1k0eA 453 2.23e+01 d.161.1.1 67938 1h6tA 291 2.27e+01 b.1.1.6 65686 c.10.2.1 65687 1qfcA 306 2.27e+01 1uteA d.159.1.1 42077 1gjuA 637 2.30e+01 b.71.1.1 60580 c.1.8.1 60581 1l1nA 183 2.35e+01 1pjr 724 2.36e+01 1pjr c.37.1.13 32391 c.37.1.13 32392 1amk 251 2.40e+01 1amk c.1.1.1 28503 1by5A 714 2.42e+01 1by5A f.4.3.3 43800 1xvaA 292 2.43e+01 1xvaA c.66.1.5 34183 1wpoA 256 2.45e+01 1lay b.57.1.1 27012 1ckqA 276 2.52e+01 1ckqA c.52.1.1 33229 1qhdA 398 2.54e+01 1qhdA a.115.1.2 63324 b.19.1.1 63325 1aa6 715 2.62e+01 2napA b.52.2.2 26916 c.81.1.1 35324 1cr6B 554 2.78e+01 1cr6B c.108.1.2 43338 c.69.1.11 34688 1rms 105 2.79e+01 9rnt d.1.1.1 36235 1by3A 714 2.81e+01 1by5A f.4.3.3 43801 1jf9A 408 2.82e+01 1c0nA c.67.1.3 62931 1g9mG 321 2.99e+01 1gc1G d.172.1.1 42492 1pamA 686 3.00e+01 1cxlA b.1.1.5 21846 b.3.1.1 22515 b.71.1.1 27753 c.1.8.1 28740 1qd1A 325 3.01e+01 1qd1A d.58.34.1 39493 d.58.34.1 39494 1cxlA 686 3.12e+01 1cxlA b.1.1.5 21829 b.3.1.1 22498 b.71.1.1 27736 c.1.8.1 28723 1d3cA 686 3.15e+01 1cxlA b.1.1.5 21827 b.3.1.1 22496 b.71.1.1 27734 c.1.8.1 28721 1korA 400 3.28e+01 1cseE 274 3.42e+01 1gci c.41.1.1 32481 1i6iA 366 3.54e+01 1bg2 c.37.1.9 61844 1aipE 405 3.61e+01 1efcA b.43.3.1 25699 b.44.1.1 25739 c.37.1.8 32134 1ckiA 317 3.64e+01 1csn d.144.1.1 41660 1a7tA 232 3.79e+01 1a7tA d.157.1.1 42041 1aogA 485 3.83e+01 3grs c.3.1.5 30517 c.3.1.5 30518 d.87.1.1 40190 1eguA 731 3.89e+01 1eguA a.102.3.2 18850 b.24.1.1 23899 b.30.3.1 24423 1kamA 194 3.90e+01