# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1i9yA 347 1.39e-66 1i9yA d.151.1.2 62101 1i9zA 347 1.55e-66 1i9yA d.151.1.2 62102 1ako 268 4.81e-07 1ako d.151.1.1 41779 1bix 287 2.57e-05 1bix d.151.1.1 41781 1hd7A 318 1.29e-04 1bix d.151.1.1 41780 3dni 260 2.58e-03 3dni d.151.1.1 41791 2dnjA 260 6.00e-03 3dni d.151.1.1 41790 1d5tA 433 2.72e-01 1gnd c.3.1.3 30422 d.16.1.6 37986 1bgj 394 2.77e-01 1pbe c.3.1.2 30352 d.16.1.2 37883 1gnd 447 2.84e-01 1gnd c.3.1.3 30423 d.16.1.6 37987 1g6aA 271 2.96e-01 1btl e.3.1.1 42704 1pbe 394 3.59e-01 1pbe c.3.1.2 30338 d.16.1.2 37869 1amj 754 3.98e-01 1amj c.8.2.1 30725 c.83.1.1 35401 1dpgA 485 4.10e-01 1dpgA c.2.1.3 30074 d.81.1.5 39989 8acn 754 4.16e-01 1amj c.8.2.1 30724 c.83.1.1 35400 1ton 235 4.59e-01 5ptp b.47.1.2 26307 1kk1A 410 5.35e-01 1d2eA 397 5.90e-01 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 2dpg 485 6.53e-01 1dpgA c.2.1.3 30076 d.81.1.5 39991 1efcA 393 1.09e+00 1efcA b.43.3.1 25680 b.44.1.1 25720 c.37.1.8 32113 1k0iA 394 1.13e+00 c.3.1.2 67942 d.16.1.2 67943 1i88A 389 1.22e+00 c.95.1.2 66070 c.95.1.2 66071 7acn 754 1.26e+00 1amj c.8.2.1 30717 c.83.1.1 35393 1c96A 753 1.27e+00 1amj c.8.2.1 30727 c.83.1.1 35403 6acn 754 1.30e+00 1amj c.8.2.1 30721 c.83.1.1 35397 1jnyA 435 1.40e+00 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1qhoA 686 1.48e+00 1cxlA b.1.1.5 21844 b.3.1.1 22513 b.71.1.1 27751 c.1.8.1 28738 1b0jA 754 2.26e+00 1amj c.8.2.1 30719 c.83.1.1 35395 1jk7A 323 2.90e+00 1auiA d.159.1.3 63144 1brnL 110 3.27e+00 1b20A d.1.1.1 36143 1b3qA 379 3.29e+00 1b3qA a.30.2.1 16993 b.40.7.1 25454 d.122.1.3 41112 1rnbA 110 3.38e+00 1b20A d.1.1.1 36196 2fcr 173 3.68e+00 1rcf c.23.5.1 31151 1eriA 276 4.09e+00 1ckqA c.52.1.1 33231 1fjmA 330 4.14e+00 1auiA d.159.1.3 42082 1qhhD 169 4.14e+00 1pjr 1a2pA 110 4.38e+00 1b20A d.1.1.1 36140 1aipE 405 4.48e+00 1efcA b.43.3.1 25699 b.44.1.1 25739 c.37.1.8 32134 1fc4A 401 4.95e+00 1bs0A c.67.1.4 59760 1vokA 200 5.40e+00 1ytbA d.129.1.1 41242 d.129.1.1 41243 1czsA 160 5.55e+00 1cztA b.18.1.2 23714 1cztA 160 5.55e+00 1cztA b.18.1.2 23715 1aqzA 149 5.67e+00 1aqzA d.1.1.1 36238 1qpsA 261 5.70e+00 1ckqA c.52.1.1 33234 1g9mG 321 6.92e+00 1gc1G d.172.1.1 42492 1afb1 154 6.97e+00 1rtm1 1qc9A 276 7.17e+00 1ckqA c.52.1.1 33235 1memA 215 7.26e+00 1cs8A d.3.1.1 37069 1i50B 1224 7.64e+00 e.29.1.2 61755 1qfgA 725 7.67e+00 1by5A f.4.3.3 43803 1ha3A 405 7.80e+00 1efcA b.43.3.1 60869 b.44.1.1 60870 c.37.1.8 60871 1cgt 684 7.87e+00 1cxlA b.1.1.5 21815 b.3.1.1 22484 b.71.1.1 27722 c.1.8.1 28709 1cl8A 276 7.98e+00 1ckqA c.52.1.1 33230 1pjr 724 8.15e+00 1pjr c.37.1.13 32391 c.37.1.13 32392 1mpyA 307 8.30e+00 1mpyA d.32.1.3 38508 d.32.1.3 38509 1b20A 110 8.46e+00 1b20A d.1.1.1 36207 1ckqA 276 8.70e+00 1ckqA c.52.1.1 33229 2cb5A 453 8.95e+00 3gcb d.3.1.1 37035 2phh 394 8.96e+00 1pbe c.3.1.2 30353 d.16.1.2 37884 1qhdA 398 9.07e+00 1qhdA a.115.1.2 63324 b.19.1.1 63325 1ppo 216 9.17e+00 1cs8A d.3.1.1 37020 1g1tA 157 9.25e+00 d.169.1.1 65104 g.3.11.1 65105 1djxB 624 9.30e+00 1djxB a.39.1.7 17343 b.7.1.1 23160 c.1.18.1 29588 1aqzB 149 9.64e+00 1aqzA d.1.1.1 36239 1gjwA 637 9.71e+00 b.71.1.1 60582 c.1.8.1 60583 1ush 550 9.76e+00 1ush d.114.1.1 40923 d.159.1.2 42079 1ddgA 374 9.78e+00 1amoA b.43.4.1 25671 c.25.1.4 31559 1ej6A 1289 9.87e+00 i.7.1.1 45967 1gpwB 201 1.01e+01 c.23.16.1 65461 1wpoA 256 1.01e+01 1lay b.57.1.1 27012 1gd1O 334 1.02e+01 1dssG c.2.1.3 29962 d.81.1.1 39877 1fzqA 181 1.03e+01 1hurA c.37.1.8 32060 1cknA 330 1.11e+01 1ckmA b.40.4.6 25360 d.142.2.3 41587 1exmA 405 1.13e+01 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 1gjuA 637 1.13e+01 b.71.1.1 60580 c.1.8.1 60581 1ckmA 330 1.15e+01 1ckmA b.40.4.6 25358 d.142.2.3 41585 1qapA 296 1.17e+01 1qpoA c.1.17.1 29559 d.41.2.1 38595 1qd1A 325 1.19e+01 1qd1A d.58.34.1 39493 d.58.34.1 39494 1hnjA 317 1.20e+01 1hn9A c.95.1.1 35969 c.95.1.1 35970 1cs8A 316 1.25e+01 1cs8A d.3.1.1 37065 1qnaA 200 1.25e+01 1ytbA d.129.1.1 41226 d.129.1.1 41227 1hv8A 367 1.28e+01 1hv8A c.37.1.13 32405 c.37.1.13 32406 1hw6A 278 1.28e+01 1frb c.1.7.1 61296 2gd1O 334 1.28e+01 1dssG c.2.1.3 29978 d.81.1.1 39893 1k0gA 453 1.31e+01 d.161.1.1 67940 1cdwA 179 1.37e+01 1ytbA d.129.1.1 41212 d.129.1.1 41213 1bhe 376 1.39e+01 1bhe b.80.1.3 28030 1cr6B 554 1.41e+01 1cr6B c.108.1.2 43338 c.69.1.11 34688 1pfo 500 1.51e+01 1pfo f.9.1.1 43826 1bouB 302 1.65e+01 1bouB c.56.6.1 33859 1eguA 731 1.68e+01 1eguA a.102.3.2 18850 b.24.1.1 23899 b.30.3.1 24423 1rds 105 1.78e+01 9rnt d.1.1.1 36236 1djxA 624 1.81e+01 1djxB a.39.1.7 17342 b.7.1.1 23159 c.1.18.1 29587 1aogA 485 1.82e+01 3grs c.3.1.5 30517 c.3.1.5 30518 d.87.1.1 40190 1ho1A 242 1.88e+01 1ho1A c.1.24.1 61097 1g38A 393 1.89e+01 2admA c.66.1.10 60235 1kamA 194 1.89e+01 1cex 214 1.89e+01 1cex c.23.9.1 31285 1hd8A 363 1.91e+01 b.105.1.1 65803 e.3.1.1 65804 1dp4A 435 1.97e+01 1dp4A c.93.1.1 35710 1k9vF 201 1.97e+01 c.23.16.1 68365 1bo1A 416 1.97e+01 1bo1A d.143.1.2 41591 1rms 105 1.97e+01 9rnt d.1.1.1 36235 1qfcA 306 2.02e+01 1uteA d.159.1.1 42077 1gv9A 260 2.03e+01 1ahjB 212 2.04e+01 2ahjB b.34.4.4 24601 1gkuB 1054 2.06e+01 c.37.1.16 65257 c.37.1.16 65258 e.10.1.1 65259 1bkpA 278 2.06e+01 1bkpA d.117.1.1 41029 1elyA 449 2.15e+01 1b8jA c.76.1.1 35028 2fcpA 723 2.19e+01 1by5A f.4.3.3 43802 1cb8A 678 2.24e+01 1cb8A a.102.3.2 18849 b.24.1.1 23898 b.30.3.1 24422 1qjdA 571 2.25e+01 1qjdA a.138.1.3 19695 c.3.1.4 30432 d.168.1.1 42315 1e43A 483 2.26e+01 1bli b.71.1.1 59217 c.1.8.1 59218 1fc6A 388 2.28e+01 1fc6A b.36.1.3 64738 c.14.1.2 64739 1e39A 571 2.28e+01 1qjdA a.138.1.3 19694 c.3.1.4 30431 d.168.1.1 42314 1ed8A 449 2.31e+01 1b8jA c.76.1.1 34988 1hp1A 516 2.31e+01 1pamA 686 2.31e+01 1cxlA b.1.1.5 21846 b.3.1.1 22515 b.71.1.1 27753 c.1.8.1 28740 1h6tA 291 2.32e+01 b.1.1.6 65686 c.10.2.1 65687 1dvpA 220 2.35e+01 1dvpA a.118.9.2 19216 g.50.1.1 45358 1qexA 288 2.36e+01 1qexA b.32.1.1 24425 9ldtA 332 2.42e+01 3ldh c.2.1.5 30154 d.162.1.1 42121 1knvA 293 2.44e+01 c.52.1.7 68707 1alkA 449 2.50e+01 1b8jA c.76.1.1 34994 1kh5A 449 2.54e+01 1jjvA 206 2.59e+01 1hn9A 317 2.60e+01 1hn9A c.95.1.1 35977 c.95.1.1 35978 1d3cA 686 2.60e+01 1cxlA b.1.1.5 21827 b.3.1.1 22496 b.71.1.1 27734 c.1.8.1 28721 1kc6A 257 2.61e+01 c.52.1.19 68419 1l1nA 183 2.63e+01 1ei5A 520 2.63e+01 1ei5A b.61.3.1 27418 b.61.3.1 27419 e.3.1.1 42772 1ckiA 317 2.64e+01 1csn d.144.1.1 41660 1f60A 458 2.64e+01 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1crzA 403 2.68e+01 1crzA b.68.4.1 27629 c.51.2.1 33211 1cxlA 686 2.70e+01 1cxlA b.1.1.5 21829 b.3.1.1 22498 b.71.1.1 27736 c.1.8.1 28723 1reqB 637 2.74e+01 1reqB c.1.19.1 29621 c.23.6.1 31248 1qs2A 401 2.77e+01 1qs1A d.166.1.1 42268 d.166.1.1 42269 1a7tA 232 2.79e+01 1a7tA d.157.1.1 42041 2anhA 446 2.80e+01 1b8jA c.76.1.1 35004 1b8jA 449 2.81e+01 1b8jA c.76.1.1 34992 2ahjB 212 2.82e+01 2ahjB b.34.4.4 24599 1jg1A 235 2.82e+01 c.66.1.7 66661 1uteA 313 2.84e+01 1uteA d.159.1.1 42078 1k5dB 201 2.84e+01 b.55.1.3 68169 1mtyD 512 2.89e+01 1mhyD a.25.1.2 16742 1cx4A 305 2.94e+01 b.82.3.2 59099 b.82.3.2 59100 2sak 121 2.97e+01 2sak d.15.5.1 37711 1mmoD 512 2.97e+01 1mhyD a.25.1.2 16770 1cqzA 554 2.97e+01 1cr6B c.108.1.2 43339 c.69.1.11 34689 1tdtA 259 2.97e+01 3tdt b.81.1.2 28055 1jc9A 269 2.99e+01 d.171.1.1 66490 1esl 162 3.00e+01 1esl d.169.1.1 42353 g.3.11.1 44225 1j9lA 247 3.07e+01 c.106.1.1 62762 1kgdA 180 3.13e+01 c.37.1.1 68582 1bt4A 362 3.15e+01 1bjnA c.67.1.4 34468 1j8wB 273 3.19e+01 c.68.1.2 66441 1qatB 622 3.20e+01 1djxB a.39.1.7 17355 b.7.1.1 23172 c.1.18.1 29600 2admA 421 3.24e+01 2admA c.66.1.10 34238 1al0F 426 3.28e+01 2bpa1 b.10.1.1 23274 1by3A 714 3.29e+01 1by5A f.4.3.3 43801 1by5A 714 3.30e+01 1by5A f.4.3.3 43800 1fqgA 263 3.35e+01 1btl e.3.1.1 42699 1aa6 715 3.40e+01 2napA b.52.2.2 26916 c.81.1.1 35324 1hyeA 313 3.46e+01 2cmd c.2.1.5 61400 d.162.1.1 61401 1reqD 637 3.57e+01 1reqB c.1.19.1 29623 c.23.6.1 31250 1fgxA 288 3.59e+01 1fgxA c.68.1.2 34508 1cus 200 3.65e+01 1cex c.23.9.1 31287 1j9jA 247 3.69e+01 c.106.1.1 62758 1b06A 210 3.70e+01 1avmA a.2.11.1 15740 d.44.1.1 38737 2act 220 3.75e+01 1cs8A d.3.1.1 37002 1fviA 297 3.76e+01 1fviA b.40.4.6 25364 d.142.2.1 41578 1wpoB 256 3.78e+01 1lay b.57.1.1 27013 1bli 483 3.84e+01 1bli b.71.1.1 27715 c.1.8.1 28702 1eblA 317 3.91e+01 1hn9A c.95.1.1 35973 c.95.1.1 35974 1kmoA 774 3.98e+01